rs27057319 SNP Detail

Summary

• ID
  rs27057319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101267430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAAGGGC TAGGGGTGGA
  CCTCCTGTGG ACTTTGGAGA AAGCTAAGAG ATGGTGTGAG CGGCCAGAAT GGGTCCACCT
  TGACACTACA CCCTTTGCCA GCCTCTTCAA AAACCTGGGA ACCCTCTTGG GGTTGGGGCT
  GGCCCTCAAC TCCAGCATGT ACCGGAAGAG CTGCAAGGGA GAACTCAGCA AGTTGCTCCC
  R
  TTCCGCTTCG CCTGCATTGT GGCTTCCTTG GTCCTCCTGC ATCTCTTTGA CTCTCTGAAG
  CCCCCATCCC AGGTTGAGTT GATCTTCTAC ATCTTGTCTT TCTGCAAGAG CGCAACAGTT
  CCCTTTGCAT CTGTCAGTCT TATCCCATAC TGCCTAGCCC GGATCCTGGG ACAGACACAC
  AAGAAGTCTT TGTAAGGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37282541	NES08551932	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27057319					SNP	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37282541	NES08551932	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101267430 () rs orientation: forward

Symbol	Name	Function Class
G6pc1	glucose-6-phosphatase catalytic subunit 1	within coordinates
Tssr3676	transcription start site region 3676	273 bp downstream
Tssr105098	transcription start site region 105098	1931 bp downstream
Tssr105099	transcription start site region 105099	116 bp downstream
Tssr105100	transcription start site region 105100	19 bp upstream
Tssr105101	transcription start site region 105101	30 bp upstream
Tssr105102	transcription start site region 105102	53 bp upstream
Tssr105103	transcription start site region 105103	568 bp upstream
Tssr105104	transcription start site region 105104	582 bp upstream
Tssr105105	transcription start site region 105105	599 bp upstream
Tssr105106	transcription start site region 105106	617 bp upstream
Tssr105107	transcription start site region 105107	702 bp upstream