rs27057322 SNP Detail

Summary

• ID
  rs27057322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101267274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTATTGTCT CATCACCATC TTCTTGTTTG GTTTCGCGCT
  TGGATTCTAC CTGCTACTAA AAGGGCTAGG GGTGGACCTC CTGTGGACTT TGGAGAAAGC
  Y
  AAGAGATGGT GTGAGCGGCC AGAATGGGTC CACCTTGACA CTACACCCTT TGCCAGCCTC
  TTCAAAAACC TGGGAACCCT CTTGGGGTTG GGGCTGGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37282544	NES08551929	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C	C	C	T	C	C	C	T	C	T
ss132727221	ENSMUSSNP3841169	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27057322					SNP	C	C	T	T	T	C	C	C	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37282544	NES08551929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101267274 () rs orientation: forward

Symbol	Name	Function Class
G6pc1	glucose-6-phosphatase catalytic subunit 1	within coordinates
Tssr3676	transcription start site region 3676	117 bp downstream
Tssr105098	transcription start site region 105098	1775 bp downstream
Tssr105099	transcription start site region 105099	26 bp upstream
Tssr105100	transcription start site region 105100	175 bp upstream
Tssr105101	transcription start site region 105101	186 bp upstream
Tssr105102	transcription start site region 105102	209 bp upstream
Tssr105103	transcription start site region 105103	724 bp upstream
Tssr105104	transcription start site region 105104	738 bp upstream
Tssr105105	transcription start site region 105105	755 bp upstream
Tssr105106	transcription start site region 105106	773 bp upstream
Tssr105107	transcription start site region 105107	858 bp upstream