rs27057413 SNP Detail

Summary

• ID
  rs27057413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101211499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGGGCCG GATCCAGGAA
  CTTGGGCTGG TGACATGGGA GGCTTGTTCA GGGTCTTTTC AGCTGCTTTT TTTTTTTTTT
  TCTTCCAGAT ATTATATTAC AAGAGCCAAA TTGGTTTCTA AAATAGCTAA ATATCCCCAT
  GTGGTAAGTA GGGTTTTGTG ATCTGAGGTG GTGTGGCAAG GTAGAGAAGA TTCTAGGAAT
  R
  AGCTGTCTGG GCATTGGGGC TTTGGAAGAC TAGCCTCCCT ACTTCCCATA CAGGAGGACT
  ATCGCCGCAC TGTCACAGAG ATTGATGAGA AAGAATACAT CAGCCTCCGG CTCATCATCT
  CAGAGCTGAG GAATCAGTAT GTGAGTAAAG CCAGTTCCTG CCCAGAGTGT CCTGCTTCTC
  CTAGGCCTGT GGTAATAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37282635	NES08552913	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27057413					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37282635	NES08552913	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101211499 () rs orientation: forward

Symbol	Name	Function Class
Psme3	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	within coordinates
Tssr105078	transcription start site region 105078	50 bp upstream
Tssr105079	transcription start site region 105079	1210 bp upstream
Tssr105080	transcription start site region 105080	1381 bp upstream
Tssr105081	transcription start site region 105081	1499 bp upstream
Tssr105082	transcription start site region 105082	1899 bp upstream