rs27057438 SNP Detail

Summary

• ID
  rs27057438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101198449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGACTGGT GATTGGGTCC TTGCAAAACT AAACAAGTTA
  TTCTGACTTC CATGCTCTTC TGTTATTTCA CAAGGATGTT ATCCCCCTGT GGTGGTGCTG
  R
  ATATCGTAAG TCAAATTCCT TGATATTTTT TTCTTTCTGC TAACTAAAAA GTCTTCATAC
  AACTCCTTTC TCTTGGATCT TTCAGCATTT AAGACCCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37282660	NES08553162	PERLEGEN	MM_PANEL2	f	SNP		A	A	G	G	G	A	G		G	A		G
ss132726817	ENSMUSSNP5583988	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A				G
ss323832800	CHEV_11_101168937	CHEVERUD	SCREENING_POP	f	SNP									G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27057438					SNP	G	A	A	G	G	G	A	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37282660	NES08553162	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101198449 () rs orientation: forward

Symbol	Name	Function Class
Gm11617	predicted gene 11617	243 bp downstream