rs27057439 SNP Detail

Summary

• ID
  rs27057439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101197847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGCCACC GAAGCCCTGT
  GTGAAGAGTT GAAGGTTATG TGGTCTTGAT CAGAAGTGGA AATGACAAAG TTTTCGCATG
  AAAACAAGTG ATTTTGCCCC ACGGCACAGA GCATGTGCAG TTCAGTAAGG GAAATTCTGG
  TTGTAGACCA AGGAGAACTG GGGTCAGGCA TCCCAGTTGG TTCATGGATG CTTTGTGGAC
  R
  TTAATCTGAG TGTTCTCAAC TTGGTTATTT GTAAGGAGCC AAGGGAGGAT ATTCCTAGAC
  GGACAGATAC TACCGTGCCT TGAAGGTTGG GGTCCCCAAA AGATAACAGC ATCCGGAAGA
  TTTTCAGTCT CACTGAAGAA GATGATGTCC AGCAATATGT TGTCAGGAAA TTAAGAAGCA
  AAACACCAAG ATTCAGCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37282661	NES08553177	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		G	G	A	G		G
ss323832798	CHEV_11_101168335	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27057439					SNP	A	A	A	A	A	A	A	A	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37282661	NES08553177	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101197847 () rs orientation: forward

Symbol	Name	Function Class
Gm11617	predicted gene 11617	within coordinates