rs27058124 SNP Detail

Summary

• ID
  rs27058124
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100752595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGGAAA GGGGAAGAGG
  GAAACTGGAG CTATCAGAGG GGAGACTCAT CTAGACTTTG ATGCTTATAC AGCTGTGGTG
  AGCAAGTCTT GTGGGACTGG GATGCCCTGA ATCACTCTTG ATGCTTTATC TCCCCTCTTT
  TTATGTTCCA AGGGATGCTA TTGACTTGGA TAATCCCCAG GACCGAGGTC AGGCCACCCA
  R
  CTCCTGGAGG GCCTGGTGCA GGAGCTGCAG AAGAAGGCGG AGCACCAGGT GGGGGAAGAT
  GGGTTTTTGC TGAAGATCAA GCTGGGGCAC TATGCCACAC AGCTCCAGGT GGGTGTGAAT
  GCTTTTGCCT TCTGCAGGAA GGGGCCCCCT TAAGCTCTCT CCCAGCATCA GAACCCCTGG
  GATTTTTACT GGCCTGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ
ss37283443	NES08555858	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ
rs27058124					SNP	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37283443	NES08555858	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100752595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	894 bp distal
Gm72578	predicted gene, 72578	1233 bp upstream
Rr456793	regulatory region 456793	1275 bp distal
Rr456794	regulatory region 456794	1619 bp distal
Rr456795	regulatory region 456795	808 bp distal
Stat5a	signal transducer and activator of transcription 5A	within coordinates
Tssr104971	transcription start site region 104971	1884 bp downstream
Tssr104972	transcription start site region 104972	1653 bp downstream
Tssr104973	transcription start site region 104973	1584 bp downstream
Tssr104974	transcription start site region 104974	1496 bp downstream
Tssr104975	transcription start site region 104975	1467 bp downstream
Tssr104976	transcription start site region 104976	1425 bp downstream
Tssr104977	transcription start site region 104977	1419 bp downstream
Tssr104978	transcription start site region 104978	1341 bp downstream
Tssr104979	transcription start site region 104979	1232 bp downstream
Tssr104980	transcription start site region 104980	1115 bp downstream
Tssr104981	transcription start site region 104981	386 bp upstream