rs27058125 SNP Detail

Summary

• ID
  rs27058125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100752304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCAGGCT AGAGACTTCT
  GTGGAACAAA TGACTTATCT TCTCCCCCAG GTAAACAGCC ATGGCGGGCT GGATTCAGGC
  CCAGCAGCTT CAGGGAGATG CCCTGCGCCA GATGCAAGTG TTGTATGGGC AGCATTTCCC
  CATCGAGGTC CGGCACTACC TGGCCCAGTG GATCGAGAGC CAGCCGTGGT AGGTGCCCCA
  Y
  ACCCTGAGTC TTCACCTCCA GGCCAAGGGT CTCCTCTTGT GGTTTGGTAT GACTCTGGTT
  CTATCTGTCC TTGTGCGGAA GGGGTGGTGT CTCTGGGAAA GGGGAAGAGG GAAACTGGAG
  CTATCAGAGG GGAGACTCAT CTAGACTTTG ATGCTTATAC AGCTGTGGTG AGCAAGTCTT
  GTGGGACTGG GATGCCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37283444	NES08555857	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27058125					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37283444	NES08555857	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100752304 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	603 bp distal
Gm72578	predicted gene, 72578	942 bp upstream
Rr456792	regulatory region 456792	1812 bp distal
Rr456793	regulatory region 456793	984 bp distal
Rr456794	regulatory region 456794	1328 bp distal
Rr456795	regulatory region 456795	517 bp distal
Stat5a	signal transducer and activator of transcription 5A	within coordinates
Tssr104969	transcription start site region 104969	1995 bp downstream
Tssr104970	transcription start site region 104970	1972 bp downstream
Tssr104971	transcription start site region 104971	1593 bp downstream
Tssr104972	transcription start site region 104972	1362 bp downstream
Tssr104973	transcription start site region 104973	1293 bp downstream
Tssr104974	transcription start site region 104974	1205 bp downstream
Tssr104975	transcription start site region 104975	1176 bp downstream
Tssr104976	transcription start site region 104976	1134 bp downstream
Tssr104977	transcription start site region 104977	1128 bp downstream
Tssr104978	transcription start site region 104978	1050 bp downstream
Tssr104979	transcription start site region 104979	941 bp downstream
Tssr104980	transcription start site region 104980	824 bp downstream
Tssr104981	transcription start site region 104981	677 bp upstream