rs27058126 SNP Detail

Summary

• ID
  rs27058126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100751973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAACAGTC TCCCTTCCAA
  GAAATTGAGT GTGGGTCTTA GGCTGGGTGG CAAGAATTTT TGTGTTTGTC TAGTTAGGGA
  CTGTGGGCCT CTGTGTCTTA AGTTTCTCTT TCGGTTTGTA GACCCCCCTT TTTTTATTTA
  GTCTGGGGAT AGCTCCATCG AGCGAAGGGA CATGGAGTGA AGGGACAGGA AGAGAGAAGG
  R
  CAGCCTCGAG GGTTCCTTGT TGGAAGGGAA GGGTGGCCAT CTCTCTTCCC ACACAGGAAA
  GCGTGCCTGG GGTGAGAGAG GAGCCTGGCC TCACCTCAGT CCTTAGGTCC TTTCGTGGCA
  CTGCAGGGCA TTGGCAGGCT AGAGACTTCT GTGGAACAAA TGACTTATCT TCTCCCCCAG
  GTAAACAGCC ATGGCGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37283445	NES08555856	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27058126					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37283445	NES08555856	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100751973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	272 bp distal
Gm72578	predicted gene, 72578	611 bp upstream
Rr456792	regulatory region 456792	1481 bp distal
Rr456793	regulatory region 456793	653 bp distal
Rr456794	regulatory region 456794	997 bp distal
Rr456795	regulatory region 456795	186 bp distal
Stat5a	signal transducer and activator of transcription 5A	within coordinates
Tssr104969	transcription start site region 104969	1664 bp downstream
Tssr104970	transcription start site region 104970	1641 bp downstream
Tssr104971	transcription start site region 104971	1262 bp downstream
Tssr104972	transcription start site region 104972	1031 bp downstream
Tssr104973	transcription start site region 104973	962 bp downstream
Tssr104974	transcription start site region 104974	874 bp downstream
Tssr104975	transcription start site region 104975	845 bp downstream
Tssr104976	transcription start site region 104976	803 bp downstream
Tssr104977	transcription start site region 104977	797 bp downstream
Tssr104978	transcription start site region 104978	719 bp downstream
Tssr104979	transcription start site region 104979	610 bp downstream
Tssr104980	transcription start site region 104980	493 bp downstream
Tssr104981	transcription start site region 104981	1008 bp upstream