rs27058127 SNP Detail

Summary

• ID
  rs27058127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:100751752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACAAGG GATCCGTGCA
  GGCGGCAGCC AGGGGTGGAC TCACGCAGTG GACACTGACA TTATCACACT CCACTCGGAG
  CGGGTAGATT CTGGAGTGCA GCCCAGGGCT TCCCCGAAGA CAGCGTGGAC CCTTAGTCTT
  CTCTCCCTGA CAGCCCCAGA CACGTGCCTG GGGAGACCTG CACCTCCAGT GGCTGTCCCA
  R
  CATTGGCCTA ACTTTTAGGT TGGAACAGTC TCCCTTCCAA GAAATTGAGT GTGGGTCTTA
  GGCTGGGTGG CAAGAATTTT TGTGTTTGTC TAGTTAGGGA CTGTGGGCCT CTGTGTCTTA
  AGTTTCTCTT TCGGTTTGTA GACCCCCCTT TTTTTATTTA GTCTGGGGAT AGCTCCATCG
  AGCGAAGGGA CATGGAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37283446	NES08555855	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27058127					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37283446	NES08555855	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100751752 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3835	CpG island 3835			51 bp distal
Gm72578	predicted gene, 72578			390 bp upstream
Rr456792	regulatory region 456792			1260 bp distal
Rr456793	regulatory region 456793			432 bp distal
Rr456794	regulatory region 456794			776 bp distal
Rr456795	regulatory region 456795			within coordinates
Stat5a	signal transducer and activator of transcription 5A			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr104969	transcription start site region 104969			1443 bp downstream
Tssr104970	transcription start site region 104970			1420 bp downstream
Tssr104971	transcription start site region 104971			1041 bp downstream
Tssr104972	transcription start site region 104972			810 bp downstream
Tssr104973	transcription start site region 104973			741 bp downstream
Tssr104974	transcription start site region 104974			653 bp downstream
Tssr104975	transcription start site region 104975			624 bp downstream
Tssr104976	transcription start site region 104976			582 bp downstream
Tssr104977	transcription start site region 104977			576 bp downstream
Tssr104978	transcription start site region 104978			498 bp downstream
Tssr104979	transcription start site region 104979			389 bp downstream
Tssr104980	transcription start site region 104980			272 bp downstream
Tssr104981	transcription start site region 104981			1229 bp upstream