rs27058128 SNP Detail

Summary

• ID
  rs27058128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100751663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCCCTGGG ATCTAGCACC
  CTGGAGTCCC CACGGCCTGA CACGGGACAG ACATCTGTCC CGCCTTCGAA TGGGAGCTTC
  AGAGGGAGCA GGGACAAGGG ATCCGTGCAG GCGGCAGCCA GGGGTGGACT CACGCAGTGG
  ACACTGACAT TATCACACTC CACTCGGAGC GGGTAGATTC TGGAGTGCAG CCCAGGGCTT
  Y
  CCCGAAGACA GCGTGGACCC TTAGTCTTCT CTCCCTGACA GCCCCAGACA CGTGCCTGGG
  GAGACCTGCA CCTCCAGTGG CTGTCCCAGC ATTGGCCTAA CTTTTAGGTT GGAACAGTCT
  CCCTTCCAAG AAATTGAGTG TGGGTCTTAG GCTGGGTGGC AAGAATTTTT GTGTTTGTCT
  AGTTAGGGAC TGTGGGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37283447	NES08555854	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27058128					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37283447	NES08555854	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100751663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	within coordinates
Gm72578	predicted gene, 72578	301 bp upstream
Rr456792	regulatory region 456792	1171 bp distal
Rr456793	regulatory region 456793	343 bp distal
Rr456794	regulatory region 456794	687 bp distal
Rr456795	regulatory region 456795	within coordinates
Stat5a	signal transducer and activator of transcription 5A	within coordinates
Tssr104969	transcription start site region 104969	1354 bp downstream
Tssr104970	transcription start site region 104970	1331 bp downstream
Tssr104971	transcription start site region 104971	952 bp downstream
Tssr104972	transcription start site region 104972	721 bp downstream
Tssr104973	transcription start site region 104973	652 bp downstream
Tssr104974	transcription start site region 104974	564 bp downstream
Tssr104975	transcription start site region 104975	535 bp downstream
Tssr104976	transcription start site region 104976	493 bp downstream
Tssr104977	transcription start site region 104977	487 bp downstream
Tssr104978	transcription start site region 104978	409 bp downstream
Tssr104979	transcription start site region 104979	300 bp downstream
Tssr104980	transcription start site region 104980	183 bp downstream
Tssr104981	transcription start site region 104981	1318 bp upstream