rs27058129 SNP Detail

Summary

• ID
  rs27058129
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100751247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGGGAGTC CCAGTGTGTG
  TGTAGGGAGG GGGCACCCCG CTGTAGGGGC TGTCCTCAGC CCAGCGCCGC CCAGCCTAGT
  GGTCGGTCTT GTAAGCGGGG CGCCCTGGCG CACTCGCCGG GGCGCCGGTA ATCGAGGGCG
  GAGGCAAGGA GGGAGCGACC GCTGCTGGGA GGGGTGCTGG GGCGAGCTCG CGCGCTGTGT
  W
  TGGTCTATCG GAGGCAGCTG ACCTTTGAGG AGGAAATCGC TGCTCTCTGC TCCTTCCTGT
  AGTAACAGCC TCCACCGCCG CCGCCGTCAA GAGCCGTCAG GAGCCGTCAG AAGCCCCGGC
  CTGGAGCGAC AGCCGCAGGC GCTCCGCAGC ACCAGGTGGG TGGGTCGCCG TGACTCCGCC
  CGCGGCGCGT GGACAGAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37283448	NES08555853	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27058129					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37283448	NES08555853	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100751247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	within coordinates
Gm72578	predicted gene, 72578	within coordinates
Rr456792	regulatory region 456792	755 bp distal
Rr456793	regulatory region 456793	within coordinates
Rr456794	regulatory region 456794	271 bp distal
Rr456795	regulatory region 456795	105 bp proximal
Stat5a	signal transducer and activator of transcription 5A	within coordinates
Tssr104969	transcription start site region 104969	938 bp downstream
Tssr104970	transcription start site region 104970	915 bp downstream
Tssr104971	transcription start site region 104971	536 bp downstream
Tssr104972	transcription start site region 104972	305 bp downstream
Tssr104973	transcription start site region 104973	236 bp downstream
Tssr104974	transcription start site region 104974	148 bp downstream
Tssr104975	transcription start site region 104975	119 bp downstream
Tssr104976	transcription start site region 104976	77 bp downstream
Tssr104977	transcription start site region 104977	71 bp downstream
Tssr104978	transcription start site region 104978	within coordinates
Tssr104979	transcription start site region 104979	26 bp upstream
Tssr104980	transcription start site region 104980	226 bp upstream
Tssr104981	transcription start site region 104981	1734 bp upstream