rs27058130 SNP Detail

Summary

• ID
  rs27058130
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100750985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATTTATT TATTTTTAAC AGATGATAAA ACTGAGGCCC
  TAGTTAGGGA TTTTCAGAGT TTGGGACTTC CCGGCACCCT CTGGCTGCTC CAGTTCAGCT
  S
  TCCCAGGACG CTCCTCCCTC ATTCCCCACC CACCCACCCC CGGAGCCGCA GGGGAGCACA
  GACCGGGAGT CCCAGTGTGT GTGTAGGGAG GGGGCACCCC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ
ss37283449	NES08555852	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ
rs27058130					SNP	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37283449	NES08555852	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100750985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	34 bp proximal
Gm72578	predicted gene, 72578	within coordinates
Rr456792	regulatory region 456792	493 bp distal
Rr456793	regulatory region 456793	within coordinates
Rr456794	regulatory region 456794	9 bp distal
Rr456795	regulatory region 456795	367 bp proximal
Stat5a	signal transducer and activator of transcription 5A	within coordinates
Tssr104969	transcription start site region 104969	676 bp downstream
Tssr104970	transcription start site region 104970	653 bp downstream
Tssr104971	transcription start site region 104971	274 bp downstream
Tssr104972	transcription start site region 104972	43 bp downstream
Tssr104973	transcription start site region 104973	19 bp upstream
Tssr104974	transcription start site region 104974	111 bp upstream
Tssr104975	transcription start site region 104975	133 bp upstream
Tssr104976	transcription start site region 104976	167 bp upstream
Tssr104977	transcription start site region 104977	190 bp upstream
Tssr104978	transcription start site region 104978	259 bp upstream
Tssr104979	transcription start site region 104979	288 bp upstream
Tssr104980	transcription start site region 104980	488 bp upstream
Tssr104981	transcription start site region 104981	1996 bp upstream