rs27058131 SNP Detail

Summary

• ID
  rs27058131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100750939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCACCCTT ACCTGAACAT
  GCGCGTGTAC ACACACACAC ACACACACAC AAAACTTTGT AAATCTAGAG ACAGACTAGT
  TGACTCCAGA GGTAGGAGCC ATCTCTAGGT AGATTTTTTT TTCTTTTCTT CCTCCCCCTC
  TTTTATTTTA TTTATTTATT TTTAACAGAT GATAAAACTG AGGCCCTAGT TAGGGATTTT
  Y
  AGAGTTTGGG ACTTCCCGGC ACCCTCTGGC TGCTCCAGTT CAGCTGTCCC AGGACGCTCC
  TCCCTCATTC CCCACCCACC CACCCCCGGA GCCGCAGGGG AGCACAGACC GGGAGTCCCA
  GTGTGTGTGT AGGGAGGGGG CACCCCGCTG TAGGGGCTGT CCTCAGCCCA GCGCCGCCCA
  GCCTAGTGGT CGGTCTTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37283450	NES08555851	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27058131					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37283450	NES08555851	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100750939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	80 bp proximal
Gm72578	predicted gene, 72578	within coordinates
Rr456792	regulatory region 456792	447 bp distal
Rr456793	regulatory region 456793	within coordinates
Rr456794	regulatory region 456794	16 bp proximal
Rr456795	regulatory region 456795	413 bp proximal
Stat5a	signal transducer and activator of transcription 5A	within coordinates
Tssr104969	transcription start site region 104969	630 bp downstream
Tssr104970	transcription start site region 104970	607 bp downstream
Tssr104971	transcription start site region 104971	228 bp downstream
Tssr104972	transcription start site region 104972	within coordinates
Tssr104973	transcription start site region 104973	65 bp upstream
Tssr104974	transcription start site region 104974	157 bp upstream
Tssr104975	transcription start site region 104975	179 bp upstream
Tssr104976	transcription start site region 104976	213 bp upstream
Tssr104977	transcription start site region 104977	236 bp upstream
Tssr104978	transcription start site region 104978	305 bp upstream
Tssr104979	transcription start site region 104979	334 bp upstream
Tssr104980	transcription start site region 104980	534 bp upstream