rs27058133 SNP Detail

Summary

• ID
  rs27058133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:100750412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAAGCT GGGCAAAGGG
  GATGGCAGAC TTCCAGCCTG GCCTTGTCCA ACCCCTGGGC CTTGAGGGGA ACTCTTCGGG
  ATGGGGACTA TGATCCAGGC AAAGCTCCAG GGAGCAGGTC TGCTGCCCGG CAAAGTCTGC
  AGGCAGATGT GAAGTTAGAA AGTGCCGGCT ACCCCTTCCT GCGCCTGTTT AGAAGGTAGG
  R
  CCAGCTTCAG GTGTGACCCT TCTAGGTCAC TGGATGGACT CCCGAGTGGT TTGTGGGTCA
  CAGTCTGATG ATGAGACTGT GATGTGACCA CAGTGAGGTC CTGGGCAGGC CCCTTCTCTT
  CTCTGGATTG ACGTTTCTTA CCTGCAAAGG TCAGAAGGGG GTGTGGGGGG TTGAAACCTA
  TGATTACCAA GGTCTTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37283452	NES08555874	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27058133					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37283452	NES08555874	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100750412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3835	CpG island 3835			607 bp proximal
Gm72578	predicted gene, 72578			within coordinates
Rr456792	regulatory region 456792			within coordinates
Rr456793	regulatory region 456793			408 bp proximal
Rr456794	regulatory region 456794			543 bp proximal
Rr456795	regulatory region 456795			940 bp proximal
Stat5a	signal transducer and activator of transcription 5A			Intron
				Splice-Site
Tssr104969	transcription start site region 104969			103 bp downstream
Tssr104970	transcription start site region 104970			80 bp downstream
Tssr104971	transcription start site region 104971			283 bp upstream
Tssr104972	transcription start site region 104972			525 bp upstream
Tssr104973	transcription start site region 104973			592 bp upstream
Tssr104974	transcription start site region 104974			684 bp upstream
Tssr104975	transcription start site region 104975			706 bp upstream
Tssr104976	transcription start site region 104976			740 bp upstream
Tssr104977	transcription start site region 104977			763 bp upstream
Tssr104978	transcription start site region 104978			832 bp upstream
Tssr104979	transcription start site region 104979			861 bp upstream
Tssr104980	transcription start site region 104980			1061 bp upstream