rs27058136 SNP Detail

Summary

• ID
  rs27058136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100749632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGCCTA CAGATGTAGC
  TCAGAGAACT TAGGAAACCT AATGAATCTA CTGTCACGTC CACTGTGAAA GACTGGGGGA
  CACAGGTGCC AAGTGGGGTC CACCTACCAT GAGGCAATGG GCTTGGATCT GTCACACTGG
  CTCCAAGAGT CTGGTCAAGT CACTTCCCCT ATCTGGCCTT TTATTGTTCC CATTGGTAAA
  R
  TCACCTTTAA GGCCACTGGC AGCTTTGCAT GTTGATGTTC ATCTGGAGCG GAGGGTCTAA
  CTGGCTCCCG GTCAATCCAT TGTACAGAGT AGAGGGGAAA GACGGGAAAA GGCTTATGCC
  TACTCCTCCT GAGCCCCTTA CCCTACCTGG TCCTGGCAGA GCATCTGAAG AGCAAGGTCT
  CTCCCATCCT CTGATCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37283455	NES08555871	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G	A	G	G	G	A	G	G	A	A
ss132723677	ENSMUSSNP1380123	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27058136					SNP	G	G	A	G	G	G	G	A	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37283455	NES08555871	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100749632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	1387 bp proximal
Gm72578	predicted gene, 72578	within coordinates
Rr456792	regulatory region 456792	176 bp proximal
Rr456793	regulatory region 456793	1188 bp proximal
Rr456794	regulatory region 456794	1323 bp proximal
Rr456795	regulatory region 456795	1720 bp proximal
Stat5a	signal transducer and activator of transcription 5A	545 bp upstream
Tssr104969	transcription start site region 104969	647 bp upstream
Tssr104970	transcription start site region 104970	686 bp upstream
Tssr104971	transcription start site region 104971	1063 bp upstream
Tssr104972	transcription start site region 104972	1305 bp upstream
Tssr104973	transcription start site region 104973	1372 bp upstream
Tssr104974	transcription start site region 104974	1464 bp upstream
Tssr104975	transcription start site region 104975	1486 bp upstream
Tssr104976	transcription start site region 104976	1520 bp upstream
Tssr104977	transcription start site region 104977	1543 bp upstream
Tssr104978	transcription start site region 104978	1612 bp upstream
Tssr104979	transcription start site region 104979	1641 bp upstream
Tssr104980	transcription start site region 104980	1841 bp upstream