rs27058139 SNP Detail

Summary

• ID
  rs27058139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100749463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACCACCT TCCCAGCAAG
  CCCAGCCCAG CCCAGCCAGA TGTGGGAGCC CCAGACTTCT GTGGGTCCTG GGGGAGGGGT
  CTGGAGAAGT CAATGCCTGG AAGTGGGTGG GCAGTTCTTG TACCACACCC ACTCTCAGGT
  GTCCAGATGG AGGGCATGAC CAGCGTGGTC CTCTGCCTAC AGATGTAGCT CAGAGAACTT
  R
  GGAAACCTAA TGAATCTACT GTCACGTCCA CTGTGAAAGA CTGGGGGACA CAGGTGCCAA
  GTGGGGTCCA CCTACCATGA GGCAATGGGC TTGGATCTGT CACACTGGCT CCAAGAGTCT
  GGTCAAGTCA CTTCCCCTAT CTGGCCTTTT ATTGTTCCCA TTGGTAAAGT CACCTTTAAG
  GCCACTGGCA GCTTTGCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37283458	NES08555884	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	G	A	A	A	G	A	A
ss132723673	ENSMUSSNP1393029	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27058139					SNP	A	G	A	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37283458	NES08555884	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100749463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	1556 bp proximal
Gm72578	predicted gene, 72578	within coordinates
Rr456792	regulatory region 456792	345 bp proximal
Rr456793	regulatory region 456793	1357 bp proximal
Rr456794	regulatory region 456794	1492 bp proximal
Rr456795	regulatory region 456795	1889 bp proximal
Stat5a	signal transducer and activator of transcription 5A	714 bp upstream
Tssr104969	transcription start site region 104969	816 bp upstream
Tssr104970	transcription start site region 104970	855 bp upstream
Tssr104971	transcription start site region 104971	1232 bp upstream
Tssr104972	transcription start site region 104972	1474 bp upstream
Tssr104973	transcription start site region 104973	1541 bp upstream
Tssr104974	transcription start site region 104974	1633 bp upstream
Tssr104975	transcription start site region 104975	1655 bp upstream
Tssr104976	transcription start site region 104976	1689 bp upstream
Tssr104977	transcription start site region 104977	1712 bp upstream
Tssr104978	transcription start site region 104978	1781 bp upstream
Tssr104979	transcription start site region 104979	1810 bp upstream