rs27058140 SNP Detail

Summary

• ID
  rs27058140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100749117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATGCAAC CAGATGAACT
  GGCAAAACGT CTCAGTGGGT AAAGGCGCTT GCCAAGCAAG TTTGGCAAGC ACGGTTGACA
  GAGAGACATT ATTCCATGGT TGTTGTTCCC TCCACAGGAG GGCCACAGCA TATGCACACA
  CAATAGTGAT AAGAAACAAG AAAATGATGT TTAAAGATAC AAGGATTAGG AACCTCAAAA
  Y
  GGCCCAATGA GGAGAGAGCC AGAAGCAAGG CAGGGAGCCA GCTACCTTTG GGTCCTGGTA
  AGGTCTGGGG ACATGAGTGG GTTCTGCAGA CTCTCCTACA CTTCTGCTGG GTGGCACCTC
  CCCGCTAGCT TTTGAGTAAG CAGGCCTAAC CACCTTCCCA GCAAGCCCAG CCCAGCCCAG
  CCAGATGTGG GAGCCCCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37283459	NES08555883	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	C	C	C	C	C	C	T
ss132723669	ENSMUSSNP2420796	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27058140					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37283459	NES08555883	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100749117 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	1902 bp proximal
Gm72578	predicted gene, 72578	within coordinates
Rr456792	regulatory region 456792	691 bp proximal
Rr456793	regulatory region 456793	1703 bp proximal
Rr456794	regulatory region 456794	1838 bp proximal
Stat5a	signal transducer and activator of transcription 5A	1060 bp upstream
Tssr104969	transcription start site region 104969	1162 bp upstream
Tssr104970	transcription start site region 104970	1201 bp upstream
Tssr104971	transcription start site region 104971	1578 bp upstream
Tssr104972	transcription start site region 104972	1820 bp upstream
Tssr104973	transcription start site region 104973	1887 bp upstream
Tssr104974	transcription start site region 104974	1979 bp upstream