rs27060189 SNP Detail

Summary

• ID
  rs27060189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94899436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG TGTCTATCTG CACAGGTGGT
  Y
  GGTCACCAGA GACATCATCT CCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37298409	NES08576379	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C		C		C
ss323817415	CHEV_11_94869924	CHEVERUD	SCREENING_POP	f	SNP							T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs27060189					SNP	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298409	NES08576379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94899436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	996 bp proximal
Gm36385	predicted gene, 36385	769 bp downstream
Gm51875	predicted gene, 51875	within coordinates
Gm72634	predicted gene, 72634	within coordinates
Ppp1r9b	protein phosphatase 1, regulatory subunit 9B	1712 bp downstream
Rr454921	regulatory region 454921	851 bp distal
Rr454922	regulatory region 454922	222 bp distal
Rr454923	regulatory region 454923	712 bp proximal
Rr454924	regulatory region 454924	779 bp proximal
Rr454925	regulatory region 454925	1280 bp proximal
Rr454926	regulatory region 454926	1631 bp proximal
Samd14	sterile alpha motif domain containing 14	1269 bp upstream
Tssr104328	transcription start site region 104328	1154 bp upstream
Tssr104329	transcription start site region 104329	1242 bp upstream
Tssr104330	transcription start site region 104330	1288 bp upstream
Tssr104331	transcription start site region 104331	1326 bp upstream
Tssr104332	transcription start site region 104332	1350 bp upstream
Tssr104333	transcription start site region 104333	1356 bp upstream
Tssr104334	transcription start site region 104334	1465 bp upstream
Tssr104335	transcription start site region 104335	1490 bp upstream
Tssr104336	transcription start site region 104336	1566 bp upstream
Tssr104337	transcription start site region 104337	1634 bp upstream
Tssr104338	transcription start site region 104338	1667 bp upstream
Tssr104339	transcription start site region 104339	1687 bp upstream
Tssr104340	transcription start site region 104340	1756 bp upstream
Tssr104341	transcription start site region 104341	1774 bp upstream
Tssr104342	transcription start site region 104342	1862 bp upstream
Tssr110238	transcription start site region 110238	1683 bp downstream