rs27060323 SNP Detail

Summary

• ID
  rs27060323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAG AGAGCTGTGG TGGAACTTCC
  R
  GGGTGTCACC AGAAAGGACA GGACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37298543	NES08572858	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A	G	G	G	G		A	G	G	A		G
ss132650943	ENSMUSSNP5870351	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss323817104	CHEV_11_94815096	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27060323					SNP	G	G	A	A	G	G	A	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298543	NES08572858	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844608 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	740 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	313 bp distal
Gm74287	predicted gene, 74287	469 bp downstream
Gm74290	predicted gene, 74290	1629 bp upstream
Rr454892	regulatory region 454892	1216 bp distal
Rr454893	regulatory region 454893	1398 bp proximal
Tssr3647	transcription start site region 3647	1798 bp downstream
Tssr104292	transcription start site region 104292	1950 bp downstream
Tssr104293	transcription start site region 104293	1843 bp downstream
Tssr104294	transcription start site region 104294	1809 bp downstream
Tssr104295	transcription start site region 104295	1765 bp downstream
Tssr104296	transcription start site region 104296	1741 bp downstream
Tssr104297	transcription start site region 104297	1718 bp downstream
Tssr104298	transcription start site region 104298	1684 bp downstream
Tssr104299	transcription start site region 104299	1650 bp downstream
Tssr104300	transcription start site region 104300	1630 bp downstream
Tssr104301	transcription start site region 104301	1510 bp downstream
Tssr104302	transcription start site region 104302	1496 bp downstream
Tssr104303	transcription start site region 104303	1477 bp downstream
Tssr104304	transcription start site region 104304	1435 bp downstream
Tssr104305	transcription start site region 104305	1413 bp downstream
Tssr104306	transcription start site region 104306	1398 bp downstream
Tssr104307	transcription start site region 104307	1381 bp downstream
Tssr104308	transcription start site region 104308	1308 bp downstream
Tssr104309	transcription start site region 104309	1284 bp downstream
Tssr104310	transcription start site region 104310	1198 bp downstream
Tssr104311	transcription start site region 104311	1149 bp downstream
Tssr104312	transcription start site region 104312	1080 bp downstream
Tssr104313	transcription start site region 104313	1064 bp downstream
Tssr104314	transcription start site region 104314	659 bp downstream
Tssr104315	transcription start site region 104315	1627 bp upstream