rs27060324 SNP Detail

Summary

• ID
  rs27060324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACA CACACACACA CCTCAGGCCC
  R
  CCATCCCAAC AATACATCAC ATCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37298544	NES08572857	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A		G	G	G	G		A	G	G	A		G
ss38809311	mCV22890667	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss323817103	CHEV_11_94814748	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27060324					SNP	G	G	A	A	G	G	A	G	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298544	NES08572857	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844260 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	392 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	within coordinates
Gm74287	predicted gene, 74287	817 bp downstream
Gm74290	predicted gene, 74290	1977 bp upstream
Rr454892	regulatory region 454892	868 bp distal
Rr454893	regulatory region 454893	1746 bp proximal
Tssr3647	transcription start site region 3647	1450 bp downstream
Tssr104283	transcription start site region 104283	1957 bp downstream
Tssr104284	transcription start site region 104284	1897 bp downstream
Tssr104285	transcription start site region 104285	1867 bp downstream
Tssr104286	transcription start site region 104286	1834 bp downstream
Tssr104287	transcription start site region 104287	1810 bp downstream
Tssr104288	transcription start site region 104288	1770 bp downstream
Tssr104289	transcription start site region 104289	1762 bp downstream
Tssr104290	transcription start site region 104290	1714 bp downstream
Tssr104291	transcription start site region 104291	1699 bp downstream
Tssr104292	transcription start site region 104292	1602 bp downstream
Tssr104293	transcription start site region 104293	1495 bp downstream
Tssr104294	transcription start site region 104294	1461 bp downstream
Tssr104295	transcription start site region 104295	1417 bp downstream
Tssr104296	transcription start site region 104296	1393 bp downstream
Tssr104297	transcription start site region 104297	1370 bp downstream
Tssr104298	transcription start site region 104298	1336 bp downstream
Tssr104299	transcription start site region 104299	1302 bp downstream
Tssr104300	transcription start site region 104300	1282 bp downstream
Tssr104301	transcription start site region 104301	1162 bp downstream
Tssr104302	transcription start site region 104302	1148 bp downstream
Tssr104303	transcription start site region 104303	1129 bp downstream
Tssr104304	transcription start site region 104304	1087 bp downstream
Tssr104305	transcription start site region 104305	1065 bp downstream
Tssr104306	transcription start site region 104306	1050 bp downstream
Tssr104307	transcription start site region 104307	1033 bp downstream
Tssr104308	transcription start site region 104308	960 bp downstream
Tssr104309	transcription start site region 104309	936 bp downstream
Tssr104310	transcription start site region 104310	850 bp downstream
Tssr104311	transcription start site region 104311	801 bp downstream
Tssr104312	transcription start site region 104312	732 bp downstream
Tssr104313	transcription start site region 104313	716 bp downstream
Tssr104314	transcription start site region 104314	311 bp downstream
Tssr104315	transcription start site region 104315	1975 bp upstream
Tssr110225	transcription start site region 110225	1897 bp upstream
Tssr110226	transcription start site region 110226	1857 bp upstream
Tssr110227	transcription start site region 110227	1844 bp upstream
Tssr110228	transcription start site region 110228	1784 bp upstream
Tssr110229	transcription start site region 110229	1764 bp upstream
Tssr110230	transcription start site region 110230	1727 bp upstream