rs27060325 SNP Detail

Summary

• ID
  rs27060325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC ATTGCGGACA TGCTCGCACG
  Y
  ACTTCATTCC CAGATCTCTC TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37298545	NES08572905	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C	C	T	T	T		C	T	T	C		T
ss38733517	mCV22890669	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						T
ss323817102	CHEV_11_94814642	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27060325					SNP	T	T	C	C	T	T	C	C	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298545	NES08572905	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844154 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	286 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	within coordinates
Gm74287	predicted gene, 74287	923 bp downstream
Tssr3647	transcription start site region 3647	1344 bp downstream
Tssr104283	transcription start site region 104283	1851 bp downstream
Tssr104284	transcription start site region 104284	1791 bp downstream
Tssr104285	transcription start site region 104285	1761 bp downstream
Tssr104286	transcription start site region 104286	1728 bp downstream
Tssr104287	transcription start site region 104287	1704 bp downstream
Tssr104288	transcription start site region 104288	1664 bp downstream
Tssr104289	transcription start site region 104289	1656 bp downstream
Tssr104290	transcription start site region 104290	1608 bp downstream
Tssr104291	transcription start site region 104291	1593 bp downstream
Tssr104292	transcription start site region 104292	1496 bp downstream
Tssr104293	transcription start site region 104293	1389 bp downstream
Tssr104294	transcription start site region 104294	1355 bp downstream
Tssr104295	transcription start site region 104295	1311 bp downstream
Tssr104296	transcription start site region 104296	1287 bp downstream
Tssr104297	transcription start site region 104297	1264 bp downstream
Tssr104298	transcription start site region 104298	1230 bp downstream
Tssr104299	transcription start site region 104299	1196 bp downstream
Tssr104300	transcription start site region 104300	1176 bp downstream
Tssr104301	transcription start site region 104301	1056 bp downstream
Tssr104302	transcription start site region 104302	1042 bp downstream
Tssr104303	transcription start site region 104303	1023 bp downstream
Tssr104304	transcription start site region 104304	981 bp downstream
Tssr104305	transcription start site region 104305	959 bp downstream
Tssr104306	transcription start site region 104306	944 bp downstream
Tssr104307	transcription start site region 104307	927 bp downstream
Tssr104308	transcription start site region 104308	854 bp downstream
Tssr104309	transcription start site region 104309	830 bp downstream
Tssr104310	transcription start site region 104310	744 bp downstream
Tssr104311	transcription start site region 104311	695 bp downstream
Tssr104312	transcription start site region 104312	626 bp downstream
Tssr104313	transcription start site region 104313	610 bp downstream
Tssr104314	transcription start site region 104314	205 bp downstream
Tssr110225	transcription start site region 110225	1791 bp upstream
Tssr110226	transcription start site region 110226	1751 bp upstream
Tssr110227	transcription start site region 110227	1738 bp upstream
Tssr110228	transcription start site region 110228	1678 bp upstream
Tssr110229	transcription start site region 110229	1658 bp upstream
Tssr110230	transcription start site region 110230	1621 bp upstream