rs27060326 SNP Detail

Summary

• ID
  rs27060326
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94843562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTGCTA TAGAAGCTGA
  GATGCTCCCT AGACCAGCAA ATGTTTCTTT TGTTCAAAGT ATTTTTTATT CTTTTTTTTT
  TTTTTTTTAA TGGATAGGGA CTTGTGTGAA TTGTTGGGGT TTTTTTTTTT TTTTTTTTTG
  GTTTTGTTTT TTTTTGTTTT GTTTTGTTTT TTTTCCTGAA GGTGCTATTT AACAAGGGAG
  R
  AGAGAGTGCG GGGACTTCAC CCTGCCCACT CTCTACTCTC TCTCCACTCT TCTAGTTCCT
  GGGCCTATCT GATCTCTCTC TTTCTTCTGA AACCCTCCCC TCTTGCTGCT GCTCCCTCCC
  CTCTGCCTCT CTCTTGGTCT GTCCTGCATC AGGGTTTCAG AGCACCACTT TCCAAAGCAC
  AAAACAGTTT TTACCCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37298546	NES08572904	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	G	A	A	A		A	A	G		A
ss323817098	CHEV_11_94814050	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27060326					SNP	A	G	G	A	A	G	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298546	NES08572904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94843562 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	within coordinates
D11Lis1	DNA segment, Chr 11, Lisse 1	582 bp proximal
Gm74287	predicted gene, 74287	1515 bp downstream
Rr454892	regulatory region 454892	170 bp distal
Tssr3647	transcription start site region 3647	752 bp downstream
Tssr104272	transcription start site region 104272	1992 bp downstream
Tssr104273	transcription start site region 104273	1898 bp downstream
Tssr104274	transcription start site region 104274	1880 bp downstream
Tssr104275	transcription start site region 104275	1871 bp downstream
Tssr104276	transcription start site region 104276	1860 bp downstream
Tssr104277	transcription start site region 104277	1586 bp downstream
Tssr104278	transcription start site region 104278	1565 bp downstream
Tssr104279	transcription start site region 104279	1508 bp downstream
Tssr104280	transcription start site region 104280	1496 bp downstream
Tssr104281	transcription start site region 104281	1482 bp downstream
Tssr104282	transcription start site region 104282	1412 bp downstream
Tssr104283	transcription start site region 104283	1259 bp downstream
Tssr104284	transcription start site region 104284	1199 bp downstream
Tssr104285	transcription start site region 104285	1169 bp downstream
Tssr104286	transcription start site region 104286	1136 bp downstream
Tssr104287	transcription start site region 104287	1112 bp downstream
Tssr104288	transcription start site region 104288	1072 bp downstream
Tssr104289	transcription start site region 104289	1064 bp downstream
Tssr104290	transcription start site region 104290	1016 bp downstream
Tssr104291	transcription start site region 104291	1001 bp downstream
Tssr104292	transcription start site region 104292	904 bp downstream
Tssr104293	transcription start site region 104293	797 bp downstream
Tssr104294	transcription start site region 104294	763 bp downstream
Tssr104295	transcription start site region 104295	719 bp downstream
Tssr104296	transcription start site region 104296	695 bp downstream
Tssr104297	transcription start site region 104297	672 bp downstream
Tssr104298	transcription start site region 104298	638 bp downstream
Tssr104299	transcription start site region 104299	604 bp downstream
Tssr104300	transcription start site region 104300	584 bp downstream
Tssr104301	transcription start site region 104301	464 bp downstream
Tssr104302	transcription start site region 104302	450 bp downstream
Tssr104303	transcription start site region 104303	431 bp downstream
Tssr104304	transcription start site region 104304	389 bp downstream
Tssr104305	transcription start site region 104305	367 bp downstream
Tssr104306	transcription start site region 104306	352 bp downstream
Tssr104307	transcription start site region 104307	335 bp downstream
Tssr104308	transcription start site region 104308	262 bp downstream
Tssr104309	transcription start site region 104309	238 bp downstream
Tssr104310	transcription start site region 104310	152 bp downstream
Tssr104311	transcription start site region 104311	103 bp downstream
Tssr104312	transcription start site region 104312	34 bp downstream
Tssr104313	transcription start site region 104313	18 bp downstream
Tssr104314	transcription start site region 104314	383 bp upstream
Tssr110222	transcription start site region 110222	1838 bp upstream
Tssr110223	transcription start site region 110223	1479 bp upstream
Tssr110224	transcription start site region 110224	1415 bp upstream
Tssr110225	transcription start site region 110225	1199 bp upstream
Tssr110226	transcription start site region 110226	1159 bp upstream
Tssr110227	transcription start site region 110227	1146 bp upstream
Tssr110228	transcription start site region 110228	1086 bp upstream
Tssr110229	transcription start site region 110229	1066 bp upstream
Tssr110230	transcription start site region 110230	1029 bp upstream