rs27060327 SNP Detail

Summary

• ID
  rs27060327
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94843381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGGGAG AGACCGTTCT
  ATTCCTCAGT GCAATTGTGT TGCTGAAAGA CTACCTCGTT CTTGTCTTTG TGTGTCACCG
  GGGCAACTGT GTGGGGGCGG GGATGGGGGC AGGGTGGCAG CACGCCCAGT TTGGTATCAA
  AGGTGCTACA TCTCTGTGAA GGGGTGGGGT GGGAAGGAAT TTCTGGTGCT ATAGAAGCTG
  W
  GATGCTCCCT AGACCAGCAA ATGTTTCTTT TGTTCAAAGT ATTTTTTATT CTTTTTTTTT
  TTTTTTTTAA TGGATAGGGA CTTGTGTGAA TTGTTGGGGT TTTTTTTTTT TTTTTTTTTG
  GTTTTGTTTT TTTTTGTTTT GTTTTGTTTT TTTTCCTGAA GGTGCTATTT AACAAGGGAG
  AAGAGAGTGC GGGGACTTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37298547	NES08572903	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	A	A	A	A		A	T	A	A		A
ss323817097	CHEV_11_94813869	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27060327					SNP	A	A	A	T	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298547	NES08572903	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94843381 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	within coordinates
D11Lis1	DNA segment, Chr 11, Lisse 1	763 bp proximal
Gm74287	predicted gene, 74287	1696 bp downstream
Rr454892	regulatory region 454892	within coordinates
Tssr3647	transcription start site region 3647	571 bp downstream
Tssr104272	transcription start site region 104272	1811 bp downstream
Tssr104273	transcription start site region 104273	1717 bp downstream
Tssr104274	transcription start site region 104274	1699 bp downstream
Tssr104275	transcription start site region 104275	1690 bp downstream
Tssr104276	transcription start site region 104276	1679 bp downstream
Tssr104277	transcription start site region 104277	1405 bp downstream
Tssr104278	transcription start site region 104278	1384 bp downstream
Tssr104279	transcription start site region 104279	1327 bp downstream
Tssr104280	transcription start site region 104280	1315 bp downstream
Tssr104281	transcription start site region 104281	1301 bp downstream
Tssr104282	transcription start site region 104282	1231 bp downstream
Tssr104283	transcription start site region 104283	1078 bp downstream
Tssr104284	transcription start site region 104284	1018 bp downstream
Tssr104285	transcription start site region 104285	988 bp downstream
Tssr104286	transcription start site region 104286	955 bp downstream
Tssr104287	transcription start site region 104287	931 bp downstream
Tssr104288	transcription start site region 104288	891 bp downstream
Tssr104289	transcription start site region 104289	883 bp downstream
Tssr104290	transcription start site region 104290	835 bp downstream
Tssr104291	transcription start site region 104291	820 bp downstream
Tssr104292	transcription start site region 104292	723 bp downstream
Tssr104293	transcription start site region 104293	616 bp downstream
Tssr104294	transcription start site region 104294	582 bp downstream
Tssr104295	transcription start site region 104295	538 bp downstream
Tssr104296	transcription start site region 104296	514 bp downstream
Tssr104297	transcription start site region 104297	491 bp downstream
Tssr104298	transcription start site region 104298	457 bp downstream
Tssr104299	transcription start site region 104299	423 bp downstream
Tssr104300	transcription start site region 104300	403 bp downstream
Tssr104301	transcription start site region 104301	283 bp downstream
Tssr104302	transcription start site region 104302	269 bp downstream
Tssr104303	transcription start site region 104303	250 bp downstream
Tssr104304	transcription start site region 104304	208 bp downstream
Tssr104305	transcription start site region 104305	186 bp downstream
Tssr104306	transcription start site region 104306	171 bp downstream
Tssr104307	transcription start site region 104307	154 bp downstream
Tssr104308	transcription start site region 104308	81 bp downstream
Tssr104309	transcription start site region 104309	57 bp downstream
Tssr104310	transcription start site region 104310	within coordinates
Tssr104311	transcription start site region 104311	62 bp upstream
Tssr104312	transcription start site region 104312	132 bp upstream
Tssr104313	transcription start site region 104313	148 bp upstream
Tssr104314	transcription start site region 104314	564 bp upstream
Tssr110222	transcription start site region 110222	1657 bp upstream
Tssr110223	transcription start site region 110223	1298 bp upstream
Tssr110224	transcription start site region 110224	1234 bp upstream
Tssr110225	transcription start site region 110225	1018 bp upstream
Tssr110226	transcription start site region 110226	978 bp upstream
Tssr110227	transcription start site region 110227	965 bp upstream
Tssr110228	transcription start site region 110228	905 bp upstream
Tssr110229	transcription start site region 110229	885 bp upstream
Tssr110230	transcription start site region 110230	848 bp upstream