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rs27060328 SNP Detail
Summary
  • ID
    rs27060328
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr11:94842097 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCATTCTCT CCTCTCTCTG
GCCCGTGCAG TTCGAGTACG GAAGCGAGGG CTCCGACCCC GCCGATGTCG CTATCCAGCT
GACCTTCCTG CGCCTAATGT CCACCGAGGC CTCCCAGAAC ATCACCTATC ACTGCAAGAA
CAGCGTAGCC TACATGGACC AGCAGACTGG CAACCTCAAG AAGGCCCTGC TCCTCCAGGG
M
TCCAACGAGA TCGAGCTCAG AGGCGAAGGC AACAGTCGCT TCACCTACAG CACCCTTGTG
GACGGCTGCA CGGTGAGTCC CCCAGACTGG GTCCAGCCTG TCTCTTTGGG CATCTGGTTT
AGCCTTCTGG CAGAACAGAG TGAGCCTCAC TTCATTCCTA CCTTGGTAAT GACCCTCTCC
CGCTGTCTTC ATTCACACCA                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
ss37298548 NES08572902 PERLEGEN MM_PANEL2 f SNP A C A A A C A A A A A A
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
rs27060328 SNP A C A A A C A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss37298548 NES08572902 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94842097 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
Tssr3647 transcription start site region 3647 710 bp upstream
Tssr104261 transcription start site region 104261 1837 bp downstream
Tssr104262 transcription start site region 104262 1097 bp downstream
Tssr104263 transcription start site region 104263 964 bp downstream
Tssr104264 transcription start site region 104264 942 bp downstream
Tssr104265 transcription start site region 104265 916 bp downstream
Tssr104266 transcription start site region 104266 904 bp downstream
Tssr104267 transcription start site region 104267 837 bp downstream
Tssr104268 transcription start site region 104268 809 bp downstream
Tssr104269 transcription start site region 104269 796 bp downstream
Tssr104270 transcription start site region 104270 775 bp downstream
Tssr104271 transcription start site region 104271 721 bp downstream
Tssr104272 transcription start site region 104272 527 bp downstream
Tssr104273 transcription start site region 104273 433 bp downstream
Tssr104274 transcription start site region 104274 415 bp downstream
Tssr104275 transcription start site region 104275 406 bp downstream
Tssr104276 transcription start site region 104276 395 bp downstream
Tssr104277 transcription start site region 104277 121 bp downstream
Tssr104278 transcription start site region 104278 100 bp downstream
Tssr104279 transcription start site region 104279 43 bp downstream
Tssr104280 transcription start site region 104280 31 bp downstream
Tssr104281 transcription start site region 104281 17 bp downstream
Tssr104282 transcription start site region 104282 18 bp upstream
Tssr104283 transcription start site region 104283 190 bp upstream
Tssr104284 transcription start site region 104284 215 bp upstream
Tssr104285 transcription start site region 104285 284 bp upstream
Tssr104286 transcription start site region 104286 306 bp upstream
Tssr104287 transcription start site region 104287 333 bp upstream
Tssr104288 transcription start site region 104288 355 bp upstream
Tssr104289 transcription start site region 104289 396 bp upstream
Tssr104290 transcription start site region 104290 442 bp upstream
Tssr104291 transcription start site region 104291 451 bp upstream
Tssr104292 transcription start site region 104292 489 bp upstream
Tssr104293 transcription start site region 104293 637 bp upstream
Tssr104294 transcription start site region 104294 674 bp upstream
Tssr104295 transcription start site region 104295 732 bp upstream
Tssr104296 transcription start site region 104296 751 bp upstream
Tssr104297 transcription start site region 104297 784 bp upstream
Tssr104298 transcription start site region 104298 822 bp upstream
Tssr104299 transcription start site region 104299 850 bp upstream
Tssr104300 transcription start site region 104300 870 bp upstream
Tssr104301 transcription start site region 104301 994 bp upstream
Tssr104302 transcription start site region 104302 1006 bp upstream
Tssr104303 transcription start site region 104303 1020 bp upstream
Tssr104304 transcription start site region 104304 1059 bp upstream
Tssr104305 transcription start site region 104305 1084 bp upstream
Tssr104306 transcription start site region 104306 1099 bp upstream
Tssr104307 transcription start site region 104307 1115 bp upstream
Tssr104308 transcription start site region 104308 1185 bp upstream
Tssr104309 transcription start site region 104309 1205 bp upstream
Tssr104310 transcription start site region 104310 1250 bp upstream
Tssr104311 transcription start site region 104311 1346 bp upstream
Tssr104312 transcription start site region 104312 1416 bp upstream
Tssr104313 transcription start site region 104313 1432 bp upstream
Tssr104314 transcription start site region 104314 1848 bp upstream
Tssr110222 transcription start site region 110222 373 bp upstream
Tssr110223 transcription start site region 110223 14 bp upstream
Tssr110224 transcription start site region 110224 25 bp downstream
Tssr110225 transcription start site region 110225 238 bp downstream
Tssr110226 transcription start site region 110226 271 bp downstream
Tssr110227 transcription start site region 110227 310 bp downstream
Tssr110228 transcription start site region 110228 322 bp downstream
Tssr110229 transcription start site region 110229 382 bp downstream
Tssr110230 transcription start site region 110230 413 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory