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rs27060329 SNP Detail
Summary
  • ID
    rs27060329
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr11:94841775 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ACTCT ACAGGAGATG GGTTAGCCTC
K
TATCCAGAAA GCACAGGAAG TCCTG                                      

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss37298549 NES08572901 PERLEGEN MM_PANEL2 f SNP T G G T T G G T T T G T T G T
ss38723515 mCV22890866 ABI CRAMUS_MOUSE f SNP T G T T
ss323817096 CHEV_11_94812263 CHEVERUD SCREENING_POP f SNP G T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs27060329 SNP T T G G T T G T G T T T G G T T G T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss37298549 NES08572901 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94841775 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
Rr454892 regulatory region 454892 1107 bp proximal
Tssr3647 transcription start site region 3647 1032 bp upstream
Tssr104261 transcription start site region 104261 1515 bp downstream
Tssr104262 transcription start site region 104262 775 bp downstream
Tssr104263 transcription start site region 104263 642 bp downstream
Tssr104264 transcription start site region 104264 620 bp downstream
Tssr104265 transcription start site region 104265 594 bp downstream
Tssr104266 transcription start site region 104266 582 bp downstream
Tssr104267 transcription start site region 104267 515 bp downstream
Tssr104268 transcription start site region 104268 487 bp downstream
Tssr104269 transcription start site region 104269 474 bp downstream
Tssr104270 transcription start site region 104270 453 bp downstream
Tssr104271 transcription start site region 104271 399 bp downstream
Tssr104272 transcription start site region 104272 205 bp downstream
Tssr104273 transcription start site region 104273 111 bp downstream
Tssr104274 transcription start site region 104274 93 bp downstream
Tssr104275 transcription start site region 104275 84 bp downstream
Tssr104276 transcription start site region 104276 73 bp downstream
Tssr104277 transcription start site region 104277 156 bp upstream
Tssr104278 transcription start site region 104278 208 bp upstream
Tssr104279 transcription start site region 104279 225 bp upstream
Tssr104280 transcription start site region 104280 280 bp upstream
Tssr104281 transcription start site region 104281 294 bp upstream
Tssr104282 transcription start site region 104282 340 bp upstream
Tssr104283 transcription start site region 104283 512 bp upstream
Tssr104284 transcription start site region 104284 537 bp upstream
Tssr104285 transcription start site region 104285 606 bp upstream
Tssr104286 transcription start site region 104286 628 bp upstream
Tssr104287 transcription start site region 104287 655 bp upstream
Tssr104288 transcription start site region 104288 677 bp upstream
Tssr104289 transcription start site region 104289 718 bp upstream
Tssr104290 transcription start site region 104290 764 bp upstream
Tssr104291 transcription start site region 104291 773 bp upstream
Tssr104292 transcription start site region 104292 811 bp upstream
Tssr104293 transcription start site region 104293 959 bp upstream
Tssr104294 transcription start site region 104294 996 bp upstream
Tssr104295 transcription start site region 104295 1054 bp upstream
Tssr104296 transcription start site region 104296 1073 bp upstream
Tssr104297 transcription start site region 104297 1106 bp upstream
Tssr104298 transcription start site region 104298 1144 bp upstream
Tssr104299 transcription start site region 104299 1172 bp upstream
Tssr104300 transcription start site region 104300 1192 bp upstream
Tssr104301 transcription start site region 104301 1316 bp upstream
Tssr104302 transcription start site region 104302 1328 bp upstream
Tssr104303 transcription start site region 104303 1342 bp upstream
Tssr104304 transcription start site region 104304 1381 bp upstream
Tssr104305 transcription start site region 104305 1406 bp upstream
Tssr104306 transcription start site region 104306 1421 bp upstream
Tssr104307 transcription start site region 104307 1437 bp upstream
Tssr104308 transcription start site region 104308 1507 bp upstream
Tssr104309 transcription start site region 104309 1527 bp upstream
Tssr104310 transcription start site region 104310 1572 bp upstream
Tssr104311 transcription start site region 104311 1668 bp upstream
Tssr104312 transcription start site region 104312 1738 bp upstream
Tssr104313 transcription start site region 104313 1754 bp upstream
Tssr110222 transcription start site region 110222 51 bp upstream
Tssr110223 transcription start site region 110223 262 bp downstream
Tssr110224 transcription start site region 110224 347 bp downstream
Tssr110225 transcription start site region 110225 560 bp downstream
Tssr110226 transcription start site region 110226 593 bp downstream
Tssr110227 transcription start site region 110227 632 bp downstream
Tssr110228 transcription start site region 110228 644 bp downstream
Tssr110229 transcription start site region 110229 704 bp downstream
Tssr110230 transcription start site region 110230 735 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory