rs27060330 SNP Detail

Summary

• ID
  rs27060330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94841668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTCCAC TTTCCATATG
  GTGCTGGCTG CCTACTCCTC CTGACTGCTT TGCCTTGCCC ACTTCAGGAG AGTACTGGAT
  CGACCCTAAC CAAGGCTGCA ACCTGGACGC CATCAAGGTC TACTGCAACA TGGAGACAGG
  TCAGACCTGT GTGTTCCCTA CTCAGCCGTC TGTGCCTCAG AAGAACTGGT ACATCAGCCC
  R
  AACCCCAAGG AAAAGAAGCA CGTCTGGTTT GGAGAGAGCA TGACCGATGG ATTCCCGGTA
  CGTGAGCTGA ACCCCAGAGC AACTCTACAG GAGATGGGTT AGCCTCTTAT CCAGAAAGCA
  CAGGAAGTCC TGGAGTGGAT TTAATCTGCT TAGTGGAAGG GCAGATACAG ATCTAGGATA
  CAGGAGTTCT GGGTAGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37298550	NES08572900	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27060330					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298550	NES08572900	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94841668 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	within coordinates
Rr454892	regulatory region 454892	1214 bp proximal
Tssr3647	transcription start site region 3647	1139 bp upstream
Tssr104261	transcription start site region 104261	1408 bp downstream
Tssr104262	transcription start site region 104262	668 bp downstream
Tssr104263	transcription start site region 104263	535 bp downstream
Tssr104264	transcription start site region 104264	513 bp downstream
Tssr104265	transcription start site region 104265	487 bp downstream
Tssr104266	transcription start site region 104266	475 bp downstream
Tssr104267	transcription start site region 104267	408 bp downstream
Tssr104268	transcription start site region 104268	380 bp downstream
Tssr104269	transcription start site region 104269	367 bp downstream
Tssr104270	transcription start site region 104270	346 bp downstream
Tssr104271	transcription start site region 104271	292 bp downstream
Tssr104272	transcription start site region 104272	98 bp downstream
Tssr104273	transcription start site region 104273	4 bp downstream
Tssr104274	transcription start site region 104274	7 bp upstream
Tssr104275	transcription start site region 104275	19 bp upstream
Tssr104276	transcription start site region 104276	29 bp upstream
Tssr104277	transcription start site region 104277	263 bp upstream
Tssr104278	transcription start site region 104278	315 bp upstream
Tssr104279	transcription start site region 104279	332 bp upstream
Tssr104280	transcription start site region 104280	387 bp upstream
Tssr104281	transcription start site region 104281	401 bp upstream
Tssr104282	transcription start site region 104282	447 bp upstream
Tssr104283	transcription start site region 104283	619 bp upstream
Tssr104284	transcription start site region 104284	644 bp upstream
Tssr104285	transcription start site region 104285	713 bp upstream
Tssr104286	transcription start site region 104286	735 bp upstream
Tssr104287	transcription start site region 104287	762 bp upstream
Tssr104288	transcription start site region 104288	784 bp upstream
Tssr104289	transcription start site region 104289	825 bp upstream
Tssr104290	transcription start site region 104290	871 bp upstream
Tssr104291	transcription start site region 104291	880 bp upstream
Tssr104292	transcription start site region 104292	918 bp upstream
Tssr104293	transcription start site region 104293	1066 bp upstream
Tssr104294	transcription start site region 104294	1103 bp upstream
Tssr104295	transcription start site region 104295	1161 bp upstream
Tssr104296	transcription start site region 104296	1180 bp upstream
Tssr104297	transcription start site region 104297	1213 bp upstream
Tssr104298	transcription start site region 104298	1251 bp upstream
Tssr104299	transcription start site region 104299	1279 bp upstream
Tssr104300	transcription start site region 104300	1299 bp upstream
Tssr104301	transcription start site region 104301	1423 bp upstream
Tssr104302	transcription start site region 104302	1435 bp upstream
Tssr104303	transcription start site region 104303	1449 bp upstream
Tssr104304	transcription start site region 104304	1488 bp upstream
Tssr104305	transcription start site region 104305	1513 bp upstream
Tssr104306	transcription start site region 104306	1528 bp upstream
Tssr104307	transcription start site region 104307	1544 bp upstream
Tssr104308	transcription start site region 104308	1614 bp upstream
Tssr104309	transcription start site region 104309	1634 bp upstream
Tssr104310	transcription start site region 104310	1679 bp upstream
Tssr104311	transcription start site region 104311	1775 bp upstream
Tssr104312	transcription start site region 104312	1845 bp upstream
Tssr104313	transcription start site region 104313	1861 bp upstream
Tssr110222	transcription start site region 110222	within coordinates
Tssr110223	transcription start site region 110223	369 bp downstream
Tssr110224	transcription start site region 110224	454 bp downstream
Tssr110225	transcription start site region 110225	667 bp downstream
Tssr110226	transcription start site region 110226	700 bp downstream
Tssr110227	transcription start site region 110227	739 bp downstream
Tssr110228	transcription start site region 110228	751 bp downstream
Tssr110229	transcription start site region 110229	811 bp downstream
Tssr110230	transcription start site region 110230	842 bp downstream