rs27060331 SNP Detail

Summary

• ID
  rs27060331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94841635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCCTACC ATGCTGCTTC
  CCCCATGTTT TCATACATTC CACTTTCCAT ATGGTGCTGG CTGCCTACTC CTCCTGACTG
  CTTTGCCTTG CCCACTTCAG GAGAGTACTG GATCGACCCT AACCAAGGCT GCAACCTGGA
  CGCCATCAAG GTCTACTGCA ACATGGAGAC AGGTCAGACC TGTGTGTTCC CTACTCAGCC
  R
  TCTGTGCCTC AGAAGAACTG GTACATCAGC CCGAACCCCA AGGAAAAGAA GCACGTCTGG
  TTTGGAGAGA GCATGACCGA TGGATTCCCG GTACGTGAGC TGAACCCCAG AGCAACTCTA
  CAGGAGATGG GTTAGCCTCT TATCCAGAAA GCACAGGAAG TCCTGGAGTG GATTTAATCT
  GCTTAGTGGA AGGGCAGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37298551	NES08572899	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27060331					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298551	NES08572899	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94841635 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	within coordinates
Tssr3647	transcription start site region 3647	1172 bp upstream
Tssr104261	transcription start site region 104261	1375 bp downstream
Tssr104262	transcription start site region 104262	635 bp downstream
Tssr104263	transcription start site region 104263	502 bp downstream
Tssr104264	transcription start site region 104264	480 bp downstream
Tssr104265	transcription start site region 104265	454 bp downstream
Tssr104266	transcription start site region 104266	442 bp downstream
Tssr104267	transcription start site region 104267	375 bp downstream
Tssr104268	transcription start site region 104268	347 bp downstream
Tssr104269	transcription start site region 104269	334 bp downstream
Tssr104270	transcription start site region 104270	313 bp downstream
Tssr104271	transcription start site region 104271	259 bp downstream
Tssr104272	transcription start site region 104272	65 bp downstream
Tssr104273	transcription start site region 104273	within coordinates
Tssr104274	transcription start site region 104274	40 bp upstream
Tssr104275	transcription start site region 104275	52 bp upstream
Tssr104276	transcription start site region 104276	62 bp upstream
Tssr104277	transcription start site region 104277	296 bp upstream
Tssr104278	transcription start site region 104278	348 bp upstream
Tssr104279	transcription start site region 104279	365 bp upstream
Tssr104280	transcription start site region 104280	420 bp upstream
Tssr104281	transcription start site region 104281	434 bp upstream
Tssr104282	transcription start site region 104282	480 bp upstream
Tssr104283	transcription start site region 104283	652 bp upstream
Tssr104284	transcription start site region 104284	677 bp upstream
Tssr104285	transcription start site region 104285	746 bp upstream
Tssr104286	transcription start site region 104286	768 bp upstream
Tssr104287	transcription start site region 104287	795 bp upstream
Tssr104288	transcription start site region 104288	817 bp upstream
Tssr104289	transcription start site region 104289	858 bp upstream
Tssr104290	transcription start site region 104290	904 bp upstream
Tssr104291	transcription start site region 104291	913 bp upstream
Tssr104292	transcription start site region 104292	951 bp upstream
Tssr104293	transcription start site region 104293	1099 bp upstream
Tssr104294	transcription start site region 104294	1136 bp upstream
Tssr104295	transcription start site region 104295	1194 bp upstream
Tssr104296	transcription start site region 104296	1213 bp upstream
Tssr104297	transcription start site region 104297	1246 bp upstream
Tssr104298	transcription start site region 104298	1284 bp upstream
Tssr104299	transcription start site region 104299	1312 bp upstream
Tssr104300	transcription start site region 104300	1332 bp upstream
Tssr104301	transcription start site region 104301	1456 bp upstream
Tssr104302	transcription start site region 104302	1468 bp upstream
Tssr104303	transcription start site region 104303	1482 bp upstream
Tssr104304	transcription start site region 104304	1521 bp upstream
Tssr104305	transcription start site region 104305	1546 bp upstream
Tssr104306	transcription start site region 104306	1561 bp upstream
Tssr104307	transcription start site region 104307	1577 bp upstream
Tssr104308	transcription start site region 104308	1647 bp upstream
Tssr104309	transcription start site region 104309	1667 bp upstream
Tssr104310	transcription start site region 104310	1712 bp upstream
Tssr104311	transcription start site region 104311	1808 bp upstream
Tssr104312	transcription start site region 104312	1878 bp upstream
Tssr104313	transcription start site region 104313	1894 bp upstream
Tssr110222	transcription start site region 110222	33 bp downstream
Tssr110223	transcription start site region 110223	402 bp downstream
Tssr110224	transcription start site region 110224	487 bp downstream
Tssr110225	transcription start site region 110225	700 bp downstream
Tssr110226	transcription start site region 110226	733 bp downstream
Tssr110227	transcription start site region 110227	772 bp downstream
Tssr110228	transcription start site region 110228	784 bp downstream
Tssr110229	transcription start site region 110229	844 bp downstream
Tssr110230	transcription start site region 110230	875 bp downstream