rs27060332 SNP Detail

Summary

• ID
  rs27060332
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94841040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGGGAA ACACTTCTGA
  GCCGGAGTTT GGGGGCTGCC TTGAGTTTCT AGCCACTTTT TCTAACCATC TCTCTATCCC
  TAGGGTCCCC CTGGCTCTGC TGGTTCTCCT GGCAAAGACG GACTCAACGG TCTCCCTGGC
  CCCATTGGTC CCCCTGGTCC TCGAGGTCGC ACTGGTGACA GCGGCCCTGC TGTATGTAGC
  M
  CCACATCCTC TGCCTCATGA CCCTCCCCCA AGAAGACTTG AATACCTGGA AACCTTGATC
  TCCTTCCTCT ACACAGGGTC CCCCCGGCCC TCCTGGACCC CCTGGCCCTC CTGGACCTCC
  CAGTGGCGGT TATGACTTCA GCTTCCTGCC TCAGCCACCT CAAGAGAAGT CTCAAGATGG
  TGGCCGCTAC TACCGGGCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37298552	NES08572898	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27060332					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298552	NES08572898	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94841040 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	within coordinates
Tssr3647	transcription start site region 3647	1767 bp upstream
Tssr104256	transcription start site region 104256	1860 bp downstream
Tssr104257	transcription start site region 104257	1826 bp downstream
Tssr104258	transcription start site region 104258	1643 bp downstream
Tssr104259	transcription start site region 104259	1481 bp downstream
Tssr104260	transcription start site region 104260	1429 bp downstream
Tssr104261	transcription start site region 104261	780 bp downstream
Tssr104262	transcription start site region 104262	40 bp downstream
Tssr104263	transcription start site region 104263	72 bp upstream
Tssr104264	transcription start site region 104264	96 bp upstream
Tssr104265	transcription start site region 104265	121 bp upstream
Tssr104266	transcription start site region 104266	143 bp upstream
Tssr104267	transcription start site region 104267	174 bp upstream
Tssr104268	transcription start site region 104268	224 bp upstream
Tssr104269	transcription start site region 104269	258 bp upstream
Tssr104270	transcription start site region 104270	267 bp upstream
Tssr104271	transcription start site region 104271	283 bp upstream
Tssr104272	transcription start site region 104272	489 bp upstream
Tssr104273	transcription start site region 104273	535 bp upstream
Tssr104274	transcription start site region 104274	635 bp upstream
Tssr104275	transcription start site region 104275	647 bp upstream
Tssr104276	transcription start site region 104276	657 bp upstream
Tssr104277	transcription start site region 104277	891 bp upstream
Tssr104278	transcription start site region 104278	943 bp upstream
Tssr104279	transcription start site region 104279	960 bp upstream
Tssr104280	transcription start site region 104280	1015 bp upstream
Tssr104281	transcription start site region 104281	1029 bp upstream
Tssr104282	transcription start site region 104282	1075 bp upstream
Tssr104283	transcription start site region 104283	1247 bp upstream
Tssr104284	transcription start site region 104284	1272 bp upstream
Tssr104285	transcription start site region 104285	1341 bp upstream
Tssr104286	transcription start site region 104286	1363 bp upstream
Tssr104287	transcription start site region 104287	1390 bp upstream
Tssr104288	transcription start site region 104288	1412 bp upstream
Tssr104289	transcription start site region 104289	1453 bp upstream
Tssr104290	transcription start site region 104290	1499 bp upstream
Tssr104291	transcription start site region 104291	1508 bp upstream
Tssr104292	transcription start site region 104292	1546 bp upstream
Tssr104293	transcription start site region 104293	1694 bp upstream
Tssr104294	transcription start site region 104294	1731 bp upstream
Tssr104295	transcription start site region 104295	1789 bp upstream
Tssr104296	transcription start site region 104296	1808 bp upstream
Tssr104297	transcription start site region 104297	1841 bp upstream
Tssr104298	transcription start site region 104298	1879 bp upstream
Tssr104299	transcription start site region 104299	1907 bp upstream
Tssr104300	transcription start site region 104300	1927 bp upstream
Tssr110222	transcription start site region 110222	628 bp downstream
Tssr110223	transcription start site region 110223	997 bp downstream
Tssr110224	transcription start site region 110224	1082 bp downstream
Tssr110225	transcription start site region 110225	1295 bp downstream
Tssr110226	transcription start site region 110226	1328 bp downstream
Tssr110227	transcription start site region 110227	1367 bp downstream
Tssr110228	transcription start site region 110228	1379 bp downstream
Tssr110229	transcription start site region 110229	1439 bp downstream
Tssr110230	transcription start site region 110230	1470 bp downstream