rs27060333 SNP Detail

Summary

• ID
  rs27060333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:94841021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGGAGCC AGCAGTGGGG
  GGAGGGGAAA CACTTCTGAG CCGGAGTTTG GGGGCTGCCT TGAGTTTCTA GCCACTTTTT
  CTAACCATCT CTCTATCCCT AGGGTCCCCC TGGCTCTGCT GGTTCTCCTG GCAAAGACGG
  ACTCAACGGT CTCCCTGGCC CCATTGGTCC CCCTGGTCCT CGAGGTCGCA CTGGTGACAG
  Y
  GGCCCTGCTG TATGTAGCCC CACATCCTCT GCCTCATGAC CCTCCCCCAA GAAGACTTGA
  ATACCTGGAA ACCTTGATCT CCTTCCTCTA CACAGGGTCC CCCCGGCCCT CCTGGACCCC
  CTGGCCCTCC TGGACCTCCC AGTGGCGGTT ATGACTTCAG CTTCCTGCCT CAGCCACCTC
  AAGAGAAGTC TCAAGATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37298553	NES08572897	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27060333					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298553	NES08572897	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94841021 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	Coding-Synonymous
Rr454892	regulatory region 454892	1861 bp proximal
Tssr3647	transcription start site region 3647	1786 bp upstream
Tssr104256	transcription start site region 104256	1841 bp downstream
Tssr104257	transcription start site region 104257	1807 bp downstream
Tssr104258	transcription start site region 104258	1624 bp downstream
Tssr104259	transcription start site region 104259	1462 bp downstream
Tssr104260	transcription start site region 104260	1410 bp downstream
Tssr104261	transcription start site region 104261	761 bp downstream
Tssr104262	transcription start site region 104262	21 bp downstream
Tssr104263	transcription start site region 104263	91 bp upstream
Tssr104264	transcription start site region 104264	115 bp upstream
Tssr104265	transcription start site region 104265	140 bp upstream
Tssr104266	transcription start site region 104266	162 bp upstream
Tssr104267	transcription start site region 104267	193 bp upstream
Tssr104268	transcription start site region 104268	243 bp upstream
Tssr104269	transcription start site region 104269	277 bp upstream
Tssr104270	transcription start site region 104270	286 bp upstream
Tssr104271	transcription start site region 104271	302 bp upstream
Tssr104272	transcription start site region 104272	508 bp upstream
Tssr104273	transcription start site region 104273	554 bp upstream
Tssr104274	transcription start site region 104274	654 bp upstream
Tssr104275	transcription start site region 104275	666 bp upstream
Tssr104276	transcription start site region 104276	676 bp upstream
Tssr104277	transcription start site region 104277	910 bp upstream
Tssr104278	transcription start site region 104278	962 bp upstream
Tssr104279	transcription start site region 104279	979 bp upstream
Tssr104280	transcription start site region 104280	1034 bp upstream
Tssr104281	transcription start site region 104281	1048 bp upstream
Tssr104282	transcription start site region 104282	1094 bp upstream
Tssr104283	transcription start site region 104283	1266 bp upstream
Tssr104284	transcription start site region 104284	1291 bp upstream
Tssr104285	transcription start site region 104285	1360 bp upstream
Tssr104286	transcription start site region 104286	1382 bp upstream
Tssr104287	transcription start site region 104287	1409 bp upstream
Tssr104288	transcription start site region 104288	1431 bp upstream
Tssr104289	transcription start site region 104289	1472 bp upstream
Tssr104290	transcription start site region 104290	1518 bp upstream
Tssr104291	transcription start site region 104291	1527 bp upstream
Tssr104292	transcription start site region 104292	1565 bp upstream
Tssr104293	transcription start site region 104293	1713 bp upstream
Tssr104294	transcription start site region 104294	1750 bp upstream
Tssr104295	transcription start site region 104295	1808 bp upstream
Tssr104296	transcription start site region 104296	1827 bp upstream
Tssr104297	transcription start site region 104297	1860 bp upstream
Tssr104298	transcription start site region 104298	1898 bp upstream
Tssr104299	transcription start site region 104299	1926 bp upstream
Tssr104300	transcription start site region 104300	1946 bp upstream
Tssr110222	transcription start site region 110222	647 bp downstream
Tssr110223	transcription start site region 110223	1016 bp downstream
Tssr110224	transcription start site region 110224	1101 bp downstream
Tssr110225	transcription start site region 110225	1314 bp downstream
Tssr110226	transcription start site region 110226	1347 bp downstream
Tssr110227	transcription start site region 110227	1386 bp downstream
Tssr110228	transcription start site region 110228	1398 bp downstream
Tssr110229	transcription start site region 110229	1458 bp downstream
Tssr110230	transcription start site region 110230	1489 bp downstream