rs27060671 SNP Detail

Summary

• ID
  rs27060671
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:93541903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGCGGC TGGCGAGCAG
  AACCTCTGGA TGGACCCTTC CTCAGCAGCT TTGCTAATTT GCAGAAGCTG GGCAATTCTC
  CTCATTAACA TCTGTCAGCA TAGTCCTGCG ACGTTTCACT GTGGTGGAAG GGACTCAGCT
  CCGGATTCTG TATAGAAAAA ACACCTGGAT CCCAGTCTTT CAATGGCTTC AAGACAACCA
  S
  AAGTGCCTGC TCTTGCTCCC AGTGGACCTC TAGGCAAGAT GTCCCTGCCC ATCGGGATGT
  ACCGCCGAGC ATTCAGCTAG GATGATGCCC TAGAGGACCC TGCGACCATG ACGCCTCCTC
  CATTGGACAT GGATAGCATC CCTGGAAGTC AGTGATTCCA GAGAGCAAGT ATCAGCATCT
  TGACAAGACA GAGGAAGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37301591	NES08567927	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	C	G	G	G	G		G	G		G
ss132622616	ENSMUSSNP5664835	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C					G
ss323808117	CHEV_11_93512391	CHEVERUD	SCREENING_POP	f	SNP											C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27060671					SNP	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37301591	NES08567927	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:93541903 () rs orientation: forward

Symbol	Name	Function Class
Gm11502	predicted gene 11502	within coordinates