ATGTTCTAAA GATCCTGGAA AGTCTTGCAT TAAAAAGATT GCTTAAATAC CTGTAGTCTA TCATTTCTGG TAATATTTTT TCCCAATATC ACTTTTTTTT TTTTGGTGTG TGCTAAGCAG ATGTTATATA ACTTAACCTG ACAACACTGA ATTGGGTAAA GCTGTTAACT TCCTCTTGAC CCATTAACCA GTACTTTCCT Y GATTAAGATG TCAGTTATGA CCCTGATCAA CATCCTCTGT CACAGAATGA AAAGCAAGCT GGCCTATTAT CTGACGTGTA ATGCTATTTG AAGAATACTT TCAGCCTCGC TATGGCTCTG TGTGTAGATG TTACTCTCCT CATTTTATAC AGGGAACCAG AGAGTTTGAG AGACCAAGTG GGCTTTTCCT GAGGATTAGT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37309686 | NES08588628 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | T |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs27061364 | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37309686 | NES08588628 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr11:90695155 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
4930405D11Rik | RIKEN cDNA 4930405D11 gene | 363 bp upstream | ||||||
Rr237710 | regulatory region 237710 | 446 bp proximal | ||||||
Rr253892 | regulatory region 253892 | 1131 bp distal | ||||||
Tssr104130 | transcription start site region 104130 | 353 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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