rs27063467 SNP Detail

Summary

• ID
  rs27063467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4917000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACATTTG ATCCTGATTT
  GATCTGACCA TTTCTTGCTA TTTCCTAATC CTTTTCGACT GGACATACAC ACAATTAAGA
  ATAAAAAGAT TTTAATTTTT CTTTTGAAGT TTTGTTTTTT TTTTAAGTAG TTCTTAGCCA
  GAATGCCAGA ACTGACTGAT GTTTAGGCTA AGCATGAGCA TGGTTTTTGG CCGAGCACTC
  R
  CAATTTATAG GGATCCAACA TCGGGTGCTC ACACGGGAGC CTATAGGGGA TATTTCACAT
  TCAAGCCATA CCCATGACTG CCATGTTGGT ATTTCAGCTG TGGCAATTAC TGCAGATGCT
  GAACTCTTCT GTAATTTTAT GCAGCAGAAG TATTCCTTGT ATCTTACAGT CTCTTGTCTA
  ATTGGAACCA AGACCCAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37323686	NES08840501	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27063467					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37323686	NES08840501	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4917000 () rs orientation: forward

Symbol	Name	Function Class
Gm46728	predicted gene, 46728	within coordinates
Sephs1	selenophosphate synthetase 1	1632 bp downstream