rs27063959 SNP Detail

Summary

• ID
  rs27063959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6727388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG AAAAAGGTCT GCTTTTCTTC
  Y
  CCTAGCTTCA GTAAATATTT GGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37317582	NES08821098	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T	C		C	C	T		T
ss320211602	CHEV_2_6643623	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27063959					SNP	C	C	C	C	C	T	T	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37317582	NES08821098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6727388 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	within coordinates
Rr56941	regulatory region 56941	within coordinates
Tssr16031	transcription start site region 16031	1396 bp downstream
Tssr22455	transcription start site region 22455	1737 bp upstream
Tssr22456	transcription start site region 22456	1503 bp upstream
Tssr22457	transcription start site region 22457	948 bp upstream
Tssr22458	transcription start site region 22458	929 bp upstream
Tssr22459	transcription start site region 22459	893 bp upstream
Tssr22460	transcription start site region 22460	710 bp upstream
Tssr22461	transcription start site region 22461	674 bp upstream
Tssr22462	transcription start site region 22462	539 bp upstream
Tssr22463	transcription start site region 22463	396 bp upstream
Tssr22464	transcription start site region 22464	341 bp upstream
Tssr22465	transcription start site region 22465	328 bp upstream
Tssr22466	transcription start site region 22466	316 bp upstream