rs27063960 SNP Detail

Summary

• ID
  rs27063960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6725948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTTTTG CAGGTCATTT
  CAAGGTCTCT ACAGGCTATA GAAAAGGGTA ATATACTTGT GATTACATGA GAAGTCATGA
  AAAGGTAGCA TTGAAAGAGT TAGCTCCTGA AGTACAAGAC TAAGAAATAC TGTTCCTTAA
  AGAAGCACCA ACTCCGCCCA GAGATCACAT TGCTTAGAAC GTGACCTCAT AGGAGCAATC
  R
  GGAGACCATA AAAAGCTGGG CAGCTTTCCT GCCCTCCTTC TTGAGTCCCA CCTGTCCCAG
  CAGGCGGGAA TTCTGGGAGG AGCCCTGAGG CACAGCCAGA ACACCAGGGC CGGCAGCACC
  AGCTGCTCTC AGCCTTGCTG CCCTCCCTTC CTCCCTCCCT CCTGCCCTGC GTACTGATGG
  TTCCAAGATA TCTAGGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37317583	NES08821096	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27063960					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37317583	NES08821096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6725948 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	within coordinates
Rr56941	regulatory region 56941	within coordinates
Tssr16031	transcription start site region 16031	30 bp upstream
Tssr22455	transcription start site region 22455	297 bp upstream
Tssr22456	transcription start site region 22456	63 bp upstream
Tssr22457	transcription start site region 22457	469 bp downstream
Tssr22458	transcription start site region 22458	500 bp downstream
Tssr22459	transcription start site region 22459	513 bp downstream
Tssr22460	transcription start site region 22460	674 bp downstream
Tssr22461	transcription start site region 22461	753 bp downstream
Tssr22462	transcription start site region 22462	853 bp downstream
Tssr22463	transcription start site region 22463	1033 bp downstream
Tssr22464	transcription start site region 22464	1050 bp downstream
Tssr22465	transcription start site region 22465	1100 bp downstream
Tssr22466	transcription start site region 22466	1113 bp downstream