rs27063961 SNP Detail

Summary

• ID
  rs27063961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6725746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGCATCA AACTTTGCCC
  TTTGATCTTA CCTCTGATAA GGGTGCAAGC CTTGACTATT CTGAAGATGT GTTAACTACC
  TATGCCACCA GGGCACTAAC CCTTGTTCCA GCAGGCACAG TTCTCTTAAT GATCTCTGCT
  GCCTCAAAGA ATGGGCATCT GTCCTCAAGG TGAACCCTTT CTCTATCCCA CCAGTGGCAC
  Y
  GCACTGTTTT GCAGGTCATT TCAAGGTCTC TACAGGCTAT AGAAAAGGGT AATATACTTG
  TGATTACATG AGAAGTCATG AAAAGGTAGC ATTGAAAGAG TTAGCTCCTG AAGTACAAGA
  CTAAGAAATA CTGTTCCTTA AAGAAGCACC AACTCCGCCC AGAGATCACA TTGCTTAGAA
  CGTGACCTCA TAGGAGCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37317584	NES08821094	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27063961					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37317584	NES08821094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6725746 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	within coordinates
Rr56941	regulatory region 56941	within coordinates
Tssr16031	transcription start site region 16031	232 bp upstream
Tssr22455	transcription start site region 22455	95 bp upstream
Tssr22456	transcription start site region 22456	92 bp downstream
Tssr22457	transcription start site region 22457	671 bp downstream
Tssr22458	transcription start site region 22458	702 bp downstream
Tssr22459	transcription start site region 22459	715 bp downstream
Tssr22460	transcription start site region 22460	876 bp downstream
Tssr22461	transcription start site region 22461	955 bp downstream
Tssr22462	transcription start site region 22462	1055 bp downstream
Tssr22463	transcription start site region 22463	1235 bp downstream
Tssr22464	transcription start site region 22464	1252 bp downstream
Tssr22465	transcription start site region 22465	1302 bp downstream
Tssr22466	transcription start site region 22466	1315 bp downstream