rs27063962 SNP Detail

Summary

• ID
  rs27063962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6725656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACACAGA AGCATCAACC
  AAATTCTTGG CCTCTATTTC AATAATTACA ACCTCCACCC AATCCCCATT ATCTTAAAAT
  GGAGGCAGTA ACAAGCATCA AACTTTGCCC TTTGATCTTA CCTCTGATAA GGGTGCAAGC
  CTTGACTATT CTGAAGATGT GTTAACTACC TATGCCACCA GGGCACTAAC CCTTGTTCCA
  R
  CAGGCACAGT TCTCTTAATG ATCTCTGCTG CCTCAAAGAA TGGGCATCTG TCCTCAAGGT
  GAACCCTTTC TCTATCCCAC CAGTGGCACT GCACTGTTTT GCAGGTCATT TCAAGGTCTC
  TACAGGCTAT AGAAAAGGGT AATATACTTG TGATTACATG AGAAGTCATG AAAAGGTAGC
  ATTGAAAGAG TTAGCTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37317585	NES08821092	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27063962					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37317585	NES08821092	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6725656 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	within coordinates
Rr56941	regulatory region 56941	within coordinates
Tssr16031	transcription start site region 16031	322 bp upstream
Tssr22455	transcription start site region 22455	5 bp upstream
Tssr22456	transcription start site region 22456	182 bp downstream
Tssr22457	transcription start site region 22457	761 bp downstream
Tssr22458	transcription start site region 22458	792 bp downstream
Tssr22459	transcription start site region 22459	805 bp downstream
Tssr22460	transcription start site region 22460	966 bp downstream
Tssr22461	transcription start site region 22461	1045 bp downstream
Tssr22462	transcription start site region 22462	1145 bp downstream
Tssr22463	transcription start site region 22463	1325 bp downstream
Tssr22464	transcription start site region 22464	1342 bp downstream
Tssr22465	transcription start site region 22465	1392 bp downstream
Tssr22466	transcription start site region 22466	1405 bp downstream