rs27063963 SNP Detail

Summary

• ID
  rs27063963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6725586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAGCAAC AGAAACCAAG
  TGGTAGCAGT AGGAGTCTAT ACAGAGCCGA CAATGACAAT GTAGGACTTA AAAACACAGA
  AGCATCAACC AAATTCTTGG CCTCTATTTC AATAATTACA ACCTCCACCC AATCCCCATT
  ATCTTAAAAT GGAGGCAGTA ACAAGCATCA AACTTTGCCC TTTGATCTTA CCTCTGATAA
  R
  GGTGCAAGCC TTGACTATTC TGAAGATGTG TTAACTACCT ATGCCACCAG GGCACTAACC
  CTTGTTCCAG CAGGCACAGT TCTCTTAATG ATCTCTGCTG CCTCAAAGAA TGGGCATCTG
  TCCTCAAGGT GAACCCTTTC TCTATCCCAC CAGTGGCACT GCACTGTTTT GCAGGTCATT
  TCAAGGTCTC TACAGGCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37317586	NES08821090	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27063963					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37317586	NES08821090	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6725586 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	within coordinates
Rr56941	regulatory region 56941	within coordinates
Tssr16031	transcription start site region 16031	392 bp upstream
Tssr22455	transcription start site region 22455	49 bp downstream
Tssr22456	transcription start site region 22456	252 bp downstream
Tssr22457	transcription start site region 22457	831 bp downstream
Tssr22458	transcription start site region 22458	862 bp downstream
Tssr22459	transcription start site region 22459	875 bp downstream
Tssr22460	transcription start site region 22460	1036 bp downstream
Tssr22461	transcription start site region 22461	1115 bp downstream
Tssr22462	transcription start site region 22462	1215 bp downstream
Tssr22463	transcription start site region 22463	1395 bp downstream
Tssr22464	transcription start site region 22464	1412 bp downstream
Tssr22465	transcription start site region 22465	1462 bp downstream
Tssr22466	transcription start site region 22466	1475 bp downstream