rs27063965 SNP Detail

Summary

• ID
  rs27063965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6724670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAAAATA TACTTGCCTG
  GGAGAAAGGT CTAGGGACCA ATGTAAGATA CACATACTCA GAAGATATAA AGCGAGTAAT
  CTGGAATCAT AGCCACAGTT GACTTCTGGG TATTTTGCCA CTCAGCCTTT TGAAAAAGGC
  CAATAAAGCC AATATCAGTG TTCCATTTTC CTAGGTGAGG ATGCAGATTG CCTGCTGCTG
  Y
  AACTATCTTC TTTTGGGTAC TACTTTAGGT AAAGGAAAAG GACTTATTTA AAAACTAATT
  AGTCCAGAAC CATGCATTAT GCTGTCTCTC TTATGTAGGA TAGTATGGAA ATATTACAGT
  GTACTCCTAA TTTCTTTGTG TGGAAAACAT GTAAATATTC ACAAAGGTTT CTAACATAAT
  TCTGATTTCT GTGGTTTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37317588	NES08821086	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27063965					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37317588	NES08821086	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6724670 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	within coordinates
Rr56941	regulatory region 56941	330 bp proximal
Tssr16031	transcription start site region 16031	1308 bp upstream
Tssr22455	transcription start site region 22455	965 bp downstream
Tssr22456	transcription start site region 22456	1168 bp downstream
Tssr22457	transcription start site region 22457	1747 bp downstream
Tssr22458	transcription start site region 22458	1778 bp downstream
Tssr22459	transcription start site region 22459	1791 bp downstream
Tssr22460	transcription start site region 22460	1952 bp downstream