rs27063966 SNP Detail

Summary

• ID
  rs27063966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6724537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTCTCC CTCTTCAAAA
  GCTTGACCTT CTTAATTACA TAGAAAAACC AGTGAACAGA AGTTGAGGAA ATATATAGTC
  TCAAATGTCG TCTGGATAAA GGTATTGCTC AAAGGAGCAC AGAACCAAGC CATACATAAA
  ATATACTTGC CTGGGAGAAA GGTCTAGGGA CCAATGTAAG ATACACATAC TCAGAAGATA
  Y
  AAAGCGAGTA ATCTGGAATC ATAGCCACAG TTGACTTCTG GGTATTTTGC CACTCAGCCT
  TTTGAAAAAG GCCAATAAAG CCAATATCAG TGTTCCATTT TCCTAGGTGA GGATGCAGAT
  TGCCTGCTGC TGTAACTATC TTCTTTTGGG TACTACTTTA GGTAAAGGAA AAGGACTTAT
  TTAAAAACTA ATTAGTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37317589	NES08821085	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27063966					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37317589	NES08821085	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6724537 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	within coordinates
Rr56941	regulatory region 56941	463 bp proximal
Tssr16031	transcription start site region 16031	1441 bp upstream
Tssr22455	transcription start site region 22455	1098 bp downstream
Tssr22456	transcription start site region 22456	1301 bp downstream
Tssr22457	transcription start site region 22457	1880 bp downstream
Tssr22458	transcription start site region 22458	1911 bp downstream
Tssr22459	transcription start site region 22459	1924 bp downstream