rs27064053 SNP Detail

Summary

• ID
  rs27064053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6711259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGCTAAC AGACATCACA
  GCAGGATTGT GGGTAGAGCA AACATCTTTT TTAAAAAAAA GGTGTGTGTG GACAACTTGG
  TGACGTCTGT CCTTACCGAC CCCTTTCATG TGGGTCCTGG GGATCAAACT CAAATCATCA
  GCCTTGTCCA ACAAGCACAC TTAACCAACG AGTCATCTTG CCAGCCCAAG TGAAAACTTC
  Y
  TTTTTAGCTG TGCTGAGTAG AGGTTAGGTG CAGCCTTCCC TGAAACCTAG TAAGTTCTAC
  TATTAGAAGT CTGGTTTTTA GTGTGTATCT GGCAAGGTAA TGCACACATC GAAAATGAAC
  ACAGAACAGT ACTGATATTC TTTTGTTTGA TTTGTACATT ACTATTGTTA ATATCATTTC
  TTTGGTCACA GCTTTAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37317679	NES08821419	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27064053					SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37317679	NES08821419	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6711259 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Celf2	CUGBP, Elav-like family member 2			Intron
				Noncoding-Transcript-Variant
Rr367100	regulatory region 367100			936 bp upstream
Rr551442	regulatory region 551442			within coordinates
Rr551443	regulatory region 551443			709 bp proximal
Rr551444	regulatory region 551444			1517 bp proximal
Tssr16030	transcription start site region 16030			1101 bp upstream