rs27064954 SNP Detail

Summary

• ID
  rs27064954
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3730239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAAAAAAAAA
  AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AAAGAAAAAA GAAACTGGCC CACAGCAGGC
  TGGCCCACAG CCTGATCTCA TGTTCTTAGT TGAGGTTCTC TCCTCTTAGA TGATGTTAGC
  TTGTGTGACA TAAATCTCTC CAGCATAAAA GCTAATTGAA GAATGGAGGG GACACCTCTC
  K
  GCATAAAAGT GTGGGTGGCT GTTAGTTTGG GCTGCTAGAT GTTGAGTGTC TTAAGTGACC
  ATCATTCCCT TCTTATTTAG AGGCAGAGAA TGCCAGGATG AAGGCACTGT CAGGGTCAGA
  GTTAGGAAGG GCCTGCATTC AGGTTTATGG ATACTTCTTG CTATATCCTG ACATGGCAGA
  GAGGAAAAGT AAAACACTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37327678	NES08844450	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27064954					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37327678	NES08844450	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3730239 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	1397 bp downstream
Rr550942	regulatory region 550942	715 bp distal
Rr550943	regulatory region 550943	1590 bp proximal
Tssr15912	transcription start site region 15912	1755 bp upstream
Tssr15913	transcription start site region 15913	1860 bp upstream