rs27064956 SNP Detail

Summary

• ID
  rs27064956
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3729457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTG TATTTCCCCA GGATGGTGTC
  R
  TGATGTGACT TCGTACATGA CTGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37327680	NES08844485	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	A		A	G		G
ss320205102	CHEV_2_3645692	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27064956					SNP	A	A	A	A	A	G	A	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37327680	NES08844485	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3729457 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	Intron
Rr367092	regulatory region 367092	615 bp downstream
Rr396754	regulatory region 396754	1297 bp downstream
Rr550942	regulatory region 550942	within coordinates
Tssr15911	transcription start site region 15911	1235 bp downstream
Tssr22380	transcription start site region 22380	1672 bp upstream
Tssr22381	transcription start site region 22381	1612 bp upstream