rs27064961 SNP Detail

Summary

• ID
  rs27064961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3729150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCTTGTA GAAAGTCTAA
  AACATATTAG GTATTAGAAA TAGTTTCTCA TATTATATAC AAAAGCCTCG GCATTTGTTT
  ACACGGTTGA GAACTTTCTT TGCTGTTTCT CCATTTTGAC TTTTAGGGCC GAGAGACACC
  CTGTGGTTGA ATATATTTGT GAGGTTTTTG TAAATAAATA TAAGAGAAAT GTGTTTTTGT
  R
  GATAAACATG AGAATAAAAC ATGAGTTGTT CTCATGGTGG GTGACTGAGA CATCTCAAAC
  ATCACCGTAG CCCTAGTCTT GCAGGCTTGT GACATCACTT ATTGGTTCTA ACAGCGCACA
  AGAGAGAGTA AGAACTTGAT GTTGCCTAGA ACTGGGTGTT ATGTGAGATG CCCTTTTCCC
  TCATGAACTC AGGAGTTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37327685	NES08844480	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A		A	G		A
ss320205097	CHEV_2_3645385	CHEVERUD	SCREENING_POP	f	SNP								A			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27064961					SNP	A	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37327685	NES08844480	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3729150 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	308 bp downstream
Rr396754	regulatory region 396754	990 bp downstream
Tssr15911	transcription start site region 15911	928 bp downstream
Tssr22380	transcription start site region 22380	1365 bp upstream
Tssr22381	transcription start site region 22381	1305 bp upstream