rs27064966 SNP Detail

Summary

• ID
  rs27064966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3728739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTCCAC TGAACCCCAG
  AGTGCCTGGG ATACAGGGAT ATGCATGGCC ACCTGGCTGG ATACAGGGAT ATGCATGGCC
  ACCTGGCTGG ATACAGGGAT ATGCATGGCC ACCTGGCTTC TCAGTGTCCT CATGCTTCAT
  CTCTCCCTAG CTCTTACTTT ATAAAACGTG CTGAAGCTGT GGAGTCACAC AGGACCTAAA
  R
  GACTCTCGTC CTTGACCTCT AACTTACAAC AGCATTGTTG GCTGTCACAC ATGGTCTTGC
  CTTATCATAC CTAGCCCATG TGCTTGCCAC CACAGAGAAT ACAAACAGGA ACAGGAAACG
  GAAGTCACTA GTTACTGAGC TGGTGATGGT TTTATTGCGA GGAAGAAATG ATGAAGTTTG
  AAATTCTGTG TGGAAGAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss37327690	NES08844475	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs27064966					SNP	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37327690	NES08844475	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3728739 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	within coordinates
Rr396754	regulatory region 396754	579 bp downstream
Rr550942	regulatory region 550942	within coordinates
Tssr15911	transcription start site region 15911	517 bp downstream
Tssr22380	transcription start site region 22380	954 bp upstream
Tssr22381	transcription start site region 22381	894 bp upstream