rs27068265 SNP Detail

Summary

• ID
  rs27068265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4566080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGCTGGC AATTCTATAG
  TCGAAGGCAG CCCACTGCCA GCAACAGGGT TCCCTAAGAA TAAATTGCTG TGTGCAGGTC
  CAGATGCAGA CTGACAAGAA AGTAGGCCCC AGACGATACT AAATAGATTA TGTGCACTTG
  AGAAGCCAGA ATGGGTTCAG GTCCTGGTGA CCCCCAGCCC TGAGCTTAGG AGGAAGTGCT
  R
  GCAGCGACCC TACCTTGCTT CTGAACAGAC AGACAAGCAG CGGTGCCCTC CAGGCAGCTG
  GGGACTTGGG ATGAGACATT GCCTACAAGG AGAGGGCTGA GGTTTGTGCA GAAGCCCTCG
  TGCCTGCTGC TGCTGCTGCT GCTGCTGATA ACCCAGCTGG GTTGTGTACC TCCTTGTAAT
  CTACACAGAA CAGCCTCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37324686	NES08831825	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27068265					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37324686	NES08831825	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4566080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11157	CpG island 11157	1225 bp distal
D2Mit426	DNA Segment, Chr 2, Massachusetts Institute of Technology 426	655 bp proximal
Frmd4a	FERM domain containing 4A	within coordinates
Rr367095	regulatory region 367095	1454 bp downstream
Rr551085	regulatory region 551085	1503 bp distal
Tssr15962	transcription start site region 15962	1640 bp downstream
Tssr15963	transcription start site region 15963	1613 bp downstream
Tssr15964	transcription start site region 15964	1563 bp downstream
Tssr15965	transcription start site region 15965	1514 bp downstream
Tssr15966	transcription start site region 15966	1459 bp downstream
Tssr15967	transcription start site region 15967	1377 bp downstream
Tssr15968	transcription start site region 15968	1339 bp downstream
Tssr15969	transcription start site region 15969	1326 bp downstream
Tssr15970	transcription start site region 15970	1206 bp downstream
Tssr15971	transcription start site region 15971	1121 bp downstream
Tssr22384	transcription start site region 22384	1575 bp upstream