rs27068266 SNP Detail

Summary

• ID
  rs27068266
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4565476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTTTAGC
  AATTCTCACC TGTCTCTCTC TCTCTCTGTC TTTCTCTCTC TGTCTCTCTC TGTGTCTCTC
  TCTGTCTCTC TGTCTCTCTC TGTCTCTGTC TCTCTCTCTG TCTCTGTCTG TCTCTGTCTG
  TCTGTCTGTC TGTCTCTCTC TCTCTCTCTC TCTCTCTGTG TGTGTGTGAT GCTGGAGGAA
  K
  AATTGTGGCA CTTTGGAGCC ACATTTGAGT CACATGGGGA CATTTCCTCT TAACAGACAG
  GAGACCAAAG GCTTCCTTGC CGGAGCTGCT AAGCCTACTT CAGGCAGGAC GGTAGAGACT
  GAAAGGCATC TGTCAACCAA AGTGGTTAGG CTCATTTATT CTGGTTCTGG GTGCTTATGG
  TTTTCTTTTT AATGTTAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37324687	NES08831824	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27068266					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37324687	NES08831824	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4565476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11157	CpG island 11157	621 bp distal
D2Mit426	DNA Segment, Chr 2, Massachusetts Institute of Technology 426	1259 bp proximal
Frmd4a	FERM domain containing 4A	within coordinates
Rr367095	regulatory region 367095	850 bp downstream
Rr551085	regulatory region 551085	899 bp distal
Tssr15962	transcription start site region 15962	1036 bp downstream
Tssr15963	transcription start site region 15963	1009 bp downstream
Tssr15964	transcription start site region 15964	959 bp downstream
Tssr15965	transcription start site region 15965	910 bp downstream
Tssr15966	transcription start site region 15966	855 bp downstream
Tssr15967	transcription start site region 15967	773 bp downstream
Tssr15968	transcription start site region 15968	735 bp downstream
Tssr15969	transcription start site region 15969	722 bp downstream
Tssr15970	transcription start site region 15970	602 bp downstream
Tssr15971	transcription start site region 15971	517 bp downstream
Tssr22384	transcription start site region 22384	971 bp upstream