rs27068594 SNP Detail

Summary

• ID
  rs27068594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3470539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGTTTG ATCTCTAGTC
  CCCACATGGT GCAAGGAGAG AACCAACTCA AAGTTGTCCT CTGAACCCTA CATATTGCAA
  CTCTAGGTTT GGAAGGGCAG AGAGGCAGAT TCTGGGAGCC CAATGGCCAG TCAGCATAAC
  CCAAATGGAA TTCATCTGGC TCAGTGAGAG ATCCTGTCCT AGAGGAATAA GGCTAAGATG
  R
  ATGGTCTTTC TGTAGCTTCC ACGCGTGCTC ACAGAACCCC GCCCCCCCCA ATATAAATAA
  ATATATGAAA ATTATCTTTA GAATGAGCAA AGGATCTGAA TAATTAGTTC ATCACAACAG
  ATACAAACGT CCAGTAAGAG AATGATAAGA TGTTGAACAT CATTAACCTC CAGAGAAATG
  TAACTAAAGG CCACAATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37328415	NES08850655	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27068594					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328415	NES08850655	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3470539 () rs orientation: forward

Symbol	Name	Function Class
Gm13184	predicted gene 13184	within coordinates
Suv39h2	suppressor of variegation 3-9 2	within coordinates
Tssr15896	transcription start site region 15896	889 bp downstream