rs27068597 SNP Detail

Summary

• ID
  rs27068597
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3469578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTATTTTT GTTTTTGTTT
  TTTTTCTACT TTCTTTATGG CCATGGCTTC TTGGTCCCTC TTTGTATTAG ATACTTGTTT
  CTGTTTTTGA GACTCTGAGA AACACTCTAA AGCCATATGT CACACAGGCA ACTCGGGTAA
  CTCCAGGTCA CTGAGATTCC AGCTCTAACA CTCCTTCTGG GCAGCCTTCT CACCTCACTA
  K
  GATACAACAA TCATATGCTG ATGATTCCCA GACTTTACCT GCTGCTCAGA TAGTCAACAG
  TCTCCTGACG CCCAACCATG CTCAGGAATT CACCTGCTTT TCCTAAACCC TCTTCTGTAT
  GACTCATCAA GGTGACCCTT ATCTACCTAT TGACACAAGC TGAGAAGCAG GTAGGCTATC
  TTAATTCCTT CTCTCTAATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37328418	NES08850706	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27068597					SNP	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328418	NES08850706	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3469578 () rs orientation: forward

Symbol	Name	Function Class
Gm13184	predicted gene 13184	30 bp upstream
Suv39h2	suppressor of variegation 3-9 2	within coordinates
Tssr15896	transcription start site region 15896	47 bp upstream