rs27068601 SNP Detail

Summary

• ID
  rs27068601
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3469211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTTATG AATGGAACAT
  AGTAGGCTAG ATAAAAGCAA AACCTGTGGC TTGTAAGGAA GCATTAAAAA AAACAAAAAC
  CAAAGTTAAG AGATGGTGTG TCTAGTTTTC AGCTGAGAAT GTGAAAAGGA CAATGCTATG
  CCAACAAGTA ACTGTGGACA ACCGTAGGCA CCTGCCTCAA CTTTACTGCT GGCCACGCCA
  R
  TACTTCTTAC AATTCTTAGA AAGCATGGTC CCTGAGAACC TTAAGTACAA GTGCACTTCA
  CTCCGCTTTA CAATCTAACT GCCAAGCCAA CCAAGTCTTC TGACCTGACC TCTCTACAGC
  AGTAGCCACA ACCTCACACT CCTTAGGGGC AATGTATGAT TTTTCTCTGT ATTTTTGTTT
  TTGTTTTTTT TCTACTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37328422	NES08850702	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A		G	A		G	G	A	A		G
ss45321328	mCV23518790	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss146262154	ENSMUSSNP2268412	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss320204616	CHEV_2_3385446	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27068601					SNP	A	A	G	G	G	G	G	G	A	G	G	A	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328422	NES08850702	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3469211 () rs orientation: forward

Symbol	Name	Function Class
Gm13184	predicted gene 13184	397 bp upstream
Suv39h2	suppressor of variegation 3-9 2	within coordinates
Tssr15896	transcription start site region 15896	414 bp upstream