rs27068739 SNP Detail

Summary

• ID
  rs27068739
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3426267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCTAGGT GGAGTCATAT
  CAGCCCACCC AGGTTCTCAT ACTCGCACTT GATCTTCCTG CGTATGTCCC CTGACCCAGG
  TGGGACTTGA ATAGCTTTCA TCAGCTCAGG GTCTAACCCT TTTTAGTGGT TCCTGTTCCC
  TACTCTGAAA GGTTCGTCAT GTGCAGAAGA GCCAAAGGCC TGTGGGAATC TATTTGCTCA
  K
  AATGGTGAGC CTTAGGTAGT TTCTCACAGT AGGAAGCTTA CAAAGACAAC CCAGCTGTTG
  CAGGGAAGAG AAATCCTCTA AAAAACCAAA TCAAACAAAA CATGGTTATG ATTTCTAATT
  CTTTTCCTTG TAGATCACAT GAAAGGATTA AGGGCTCCTT CCTTGAAAAG AAGGCTGGAA
  TGCAGGTAAT TGGCTTTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37328562	NES08832328	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27068739					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328562	NES08832328	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3426267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	816 bp distal
Dclre1c	DNA cross-link repair 1C	within coordinates
Rr367090	regulatory region 367090	1075 bp downstream
Rr550902	regulatory region 550902	1055 bp distal
Rr550903	regulatory region 550903	762 bp distal
Tssr15890	transcription start site region 15890	1023 bp downstream
Tssr22367	transcription start site region 22367	1206 bp upstream